Detailed information on CNT30620908


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674439Cajanus cajanSetaria viridis17.4652.7783.87124forward
CNT30523223Cajanus cajanSetaria italica2028.5185.21142forward
CNT30515591Cajanus cajanJuglans regia16.7622.9383.19119forward
CNT30617555Cajanus cajanSesamum indicum19.322.7689.78137forward
CNT30729972Cajanus cajanCorchorus capsularis19.7224.3185140forward
CNT30710175Cajanus cajanGlycine max17.6131.5789.6125forward
CNT30290105Cajanus cajanTriticum aestivum18.0328.1989.06128forward
CNT30387749Cajanus cajanTriticum turgidum18.8721.0489.55134forward
CNT30586289Cajanus cajanMusa acuminata14.5136.2787.38103forward
CNT30246208Cajanus cajanAvena sativa18.4523.187.79131forward
CNT30659185Cajanus cajanTriticum dicoccoides18.8725.1489.55134forward
CNT30134237Cajanus cajanLolium perenne18.8721.388.06134forward
CNT30216686Cajanus cajanKalanchoe fedtschenkoi19.5824.2285.61139forward
CNT30580392Cajanus cajanEchinochloa crusgalli19.1524.5985.29136forward
CNT30557621Cajanus cajanPanicum hallii19.7225.586.43140forward

Expression of CNT30620908

Peptides detected in this lncRNA

>peptide 1 (64 aa)
MEKVKLVIVSAALVGLGVVLAVVFKRVGLLLLVPGVAGRRAQLLHLIPRRRAFRIGASRARLLRA

>peptide 2 (66 aa)
MENGKGETSYRKCGTRRSRGCPCSSFQEGRTASACPWRGWPPRSAPPPHPTPPRIPHRRLPRTPPPR

>peptide 3 (43 aa)
KLVLNNNKQNVQLNVTNIFFFSPTNIFWIKFNYNFLSMIDIVF*

>peptide 4 (37 aa)
MVNNLINLNNNYYFVFPQLYDTSEDNTLNLEPFFEIS*

Sequence

>CNT30620908
TTAAGTTAGTATTGAATAATAATAAACAAAATGTCCAGTTGAATGTAACAAATATATTTTTTTTTTCTCCTACAAATATCTTTTGGATAAAATTTAACTA
TAACTTTTTAAGTATGATTGATATTGTTTTCTAATTAAAGTTGGAGTTTTATTTTAGTATTATAAAAATATATTTAATGTATACATATTATTGAGATAAA
ATTCTAACTCAGATTAGAAAATAATATCAATCATATTTAAAAAATTATACGTAAATTTTGTCCATATTTTTTTAGAAAATGAATTGTATTCAAGACATAT
GAGATATTAAATATAGGTACTTCTTCTCAATATTAAGACTACAAATTTGCGAGTAATATATTTGATGGTTAATAACTTGATAAATCTAAACAATAATTAT
TATTTTGTTTTTCCACAGCTGTACGATACAAGTGAAGACAATACATTAAATCTTGAACCCTTCTTCGAAATTTCATGAGCATATTGAGAAGGTAAGAGAA
GCATGTAAATGGAAAATGGAAAAGGTGAAACTAGTTATCGTAAGTGCGGCACTCGTCGGTCTCGGGGTTGTCCTTGCAGTAGTTTTCAAGAGGGTCGGAC
TGCTTCTGCTTGTCCCTGGCGTGGCTGGCCGCCGCGCTCAGCTCCTCCACCTCATCCCACGCCGCCGCGCATTCCGCATCGGCGCCTCCCGCGCACGCCT
CCTCCGCGCT