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Detailed information on CNT3062074


BLAST search results

BLAST vs Swiss-Prot:
sp|P13951|RBS_SINAL, E-value = 5e-55

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30620550Arabidopsis lyrataCajanus cajan21.1818.9581.06227forward

Expression of CNT3062074

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MQLTLPPLLEIEVMSLLALRVTGKVADDFKPVNGATMVA*

>peptide 2 (88 aa)
MNVLERELSIGEAWGLVGNETDALDLTVVVESDDPNEGIRVLLLAFLHFLQHLSRIGASEQWKLPHCPVPSIVVSGSVSVLTVHKSVL*

>peptide 3 (30 aa)
MEASTLSSTVHRSIRECFRAHGTQIRAINR*

>peptide 4 (32 aa)
MIRDKGKVRCLVPLTRIQHKESTCCGEGSQLP*

Sequence

>CNT3062074
GCAATAAAAATTCTAAACCTAATTAAGCATCGGAAAAATCAAGACGCAAGAATATATAAAATACATATTCATAAATCAGACATTTGACAATCCGATATAA
AATGTCTCATAAAGAGAAAACAACACAGACAATAGGAATGAAATAAGCAGAGATAATTTATATGAATGTTTTAGAAAGGGAATTAAGCATCGGTGAAGCT
TGGGGGCTTGTAGGCAATGAAACTGATGCATTGGACTTGACGGTTGTTGTCGAATCCGATGATCCTAATGAAGGCATTAGGGTACTCCTTCTTGCATTCT
TGCACTTCCTTCAACACTTGAGCAGAATCGGTGCATCCGAACAATGGAAGCTTCCACATTGTCCAGTACCGTCCATCGTAGTATCCGGGAGTGTTTCCGT
GCTCACGGTACACAAATCCGTGCTATAAACAGATGACAAAACCATTCAATACCATTGATAGTCGAGGAGTCACACGGTTATAGTCTATTTCGGGTTTTAA
AATCCGGTTATTGACTTATGTTTCTACCAATGAACAGAAATAATAAAGGATGATTAGAGACAAAGGAAAAGTTCGGTGTTTAGTACCTCTAACTCGAATT
CAACACAAGGAATCCACTTGTTGCGGAGAAGGTAGTCAACTTCCTTAGCCAATTCGACGTCAGTAAGGTCAGGGAGGTAAGATAGAGTAGTCAACTTCCT
TAGCCAATTCGACGTCAGTAAGGTCAGGGAGGTAAGATAGAGTCTCAAACTTCTTCTTTCCAATTGGTGGCCACACCTATAACTCCCAATTCCAATTATT
CTAAGTTTTGTTCAATTTCACTAATTACACATGACAAAATACAGTTTTTATAGGACATTACCTTCATGCAGCTAACTCTTCCGCCGTTGCTTGAGATAGA
AGTAATGTCGTTGTTGGCCTTGCGGGTGACGGGGAAAGTAGCGGATGACTTCAAGCCGGTGAATGGAGCGACCATGGTGGCTTGAGCTGGGGAGGTAACC
ACAGCGGCAGAGGAGAGCATAGAGGAAGCCATCACAACTTCTTCTTCTTTTGCTCTTTTCTCTTACTTAATT