CANTATAdb - search

Detailed information on CNT30620704

BLAST search results

BLAST vs Swiss-Prot:
sp|P10707|CB2D_SOLLC, E-value = 3e-33

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30516186	Cajanus cajan	Juglans regia	12.31	36.5	85.92	142	forward

Expression of CNT30620704

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MDHLIPHNNLGKKFTNPSFQIMTLTCMNMIPPYLTN*

>peptide 2 (34 aa)
MYEYDTSLFNKLRLVNKKICSIIALVMRNDTSPS*

>peptide 3 (53 aa)
MDCELVLSKRFILFFKANLLLGLKYLNINPNILLQTQTQTHKRSCMVGNLRII*

>peptide 4 (48 aa)
MANLPFLISLTFSSAKVAGSSARTSGVMHPSAPSMAQRPWITLFHITI*

Sequence

>CNT30620704
TAGAATTAACATAAAATTCCCATAGGTTGCTTTAGACAAAACTAGATCAACAAACATGGGATATCCCAGGTTTAAAATGAACCTTAGTCCTTAAGAAGTA
CACTAATCCGACAATTATTATGATCATAATCTACACATAAATCACAACAAGGGATGGATTATGGATACATTTAAGAACCGGGCACAAACTTAGTGGCATA
GACCCAAGCATTGTTGGCCACAGGGTTGTCAAGGTGGTCCAAAAGATTCTCCAATGGGCCTTTTCCGGTGACAATGGCCTGAACAAAGAAACCAAACATA
GAGAACATGGCCAACCTTCCATTCTTGATCTCCTTGACTTTTAGCTCAGCAAAAGTGGCAGGGTCATCAGCAAGGACTTCTGGGGTGATGCATCCTAGTG
CTCCAAGCATGGCCCAACGCCCATGGATCACCTTATTCCACATAACAATTTAGGGAAAAAATTCACTAATCCTTCTTTTCAAATTATGACACTTACATGT
ATGAATATGATACCTCCTTATTTAACAAATTAAGACTAGTCAACAAAAAAATTTGCTCCATTATTGCTCTCGTTATGAGAAATGATACAAGCCCATCATA
AAAATTAAGAAAATTCTTAGTGTGTCTTATAAATCAAACTCAATACTATAAAATTAATTTATAAAATAAAAGTTATTTTACTTAAATATTCAATTTAAAC
TTTCGAAGAATTTAGAATAATTCTAATATTATTTTAAAATATAAATTTAAATCTAATTTAACTTTACAAAATTTATTTTAAGAGATTTAGTTAAACTTTT
CTCACTTTATTAGACAATAGATGTTTGATTATCTAAACTAACGTGATTTGAAGTAAATATTCATATATTAAGCATTGAAAAACTGATTTTATATCTAAAA
TGGATTGTGAATTAGTGTTAAGTAAAAGGTTTATACTTTTCTTTAAGGCTAATTTGCTTCTAGGATTAAAATATTTAAACATAAATCCAAATATTCTTTT
GCAAACACAAACCCAAACACACAAAAGGTCATGCATGGTTGGAAACTTAAGAATAATTTAAAGTAAAATTACTTAGATCTTTCTGCAATTAGTTAGTTTG
AAGAATCTTTTGAAAGGGAAGATAATGAGAAAGAGAAGCCAAGTAACTAACCTC