Detailed information on CNT306200


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30454405Zea maysSaccharum spontaneum90.0785.3796.33245forward
CNT30363999Zea maysSorghum bicolor87.8783.8696.23239forward

Expression of CNT306200

Peptides detected in this lncRNA

>peptide 1 (78 aa)
SSWPARDTFSFLKTEVSKSSDGMAVPMTDGDETFAATARRRSAEAATRHGCCVAGKETEVAAVATEGAGFRVLRPMAR*

>peptide 2 (37 aa)
MGAAWRGRRRRWRLWLRRGRGLGFCGRWRGRWKRNRG*

>peptide 3 (70 aa)
LLMAGQGHLFLLEDGGLEVERRHGGADDRRRRDLRSHGAAAVRGGGDEAWVLRGGEGDGGGGCGYGGGGV*

Sequence

>CNT306200
CTCCTCATGGCCGGCCAGGGACACCTTTTCCTTCTTGAAGACGGAGGTCTCGAAGTCGAGCGACGGCATGGCGGTGCCGATGACCGACGGCGACGAGACC
TTCGCAGCCACGGCGCGGCGGCGGTCCGCGGAGGCGGCGACGAGGCATGGGTGCTGCGTGGCGGGGAAGGAGACGGAGGTGGCGGCTGTGGCTACGGAGG
GGGCGGGGTTTAGGGTTTTGCGGCCGATGGCGAGGTAGGTGGAAGAGGAACAGAGGCTAGTGAAGAGTGAGG