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Detailed information on CNT30619828


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SRV5|METE2_ARATH, E-value = 9e-49

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30533996Cajanus cajanEucalyptus grandis17.1325.4190.3262forward
CNT30404182Cajanus cajanBeta vulgaris35.6424.7687.6129forward
CNT30711949Cajanus cajanGlycine max86.7453.1393.31314forward
CNT30224666Cajanus cajanHordeum vulgare27.0744.1482.6598forward
CNT30563287Cajanus cajanActinidia chinensis28.4522.288.35103forward
CNT30312764Cajanus cajanCamelina sativa50.5548.5483.06183forward
CNT30264951Cajanus cajanBrassica rapa52.7656.8581.15191forward
CNT30129050Cajanus cajanCorymbia citriodora24.3124.3189.7788forward
CNT30478263Cajanus cajanArabidopsis halleri19.3420.239070forward
CNT3027096Cajanus cajanPopulus trichocarpa54.1456.3284.18196forward
CNT30104764Cajanus cajanOryza rufipogon22.129.968580forward
CNT30578474Cajanus cajanOryza barthii21.553984.6278forward
CNT30118059Cajanus cajanOryza nivara22.127.38580forward
CNT30604899Cajanus cajanOryza punctata19.8930.984.7272forward
CNT30333329Cajanus cajanCynara cardunculus28.4521.2886.41103forward
CNT3049510Cajanus cajanCucumis sativus46.9642.0882.94170forward

Expression of CNT30619828

Peptides detected in this lncRNA

>peptide 1 (51 aa)
FAHNGLETLKGSERSSKVISPNVPSINHSSKEVFSSGKSTLDQIKSLSSTD*

>peptide 2 (55 aa)
MFLPSTTPAKRYFPAGNPPLIKSRVLVPRTKSNPYAVTPARDLRVLYASAGMSAK*

>peptide 3 (39 aa)
MPQQGCQQSRCKFYICITKCLQLVSFKVQDKGRLIKLNP*

Sequence

>CNT30619828
CTTTGCCCACAATGGCCTCGAGACTCTGAAGGGTAGTGAGAGAAGCAGCAAGGTCATTAGCCCAAATGTTCCTTCCATCAACCACTCCAGCAAAGAGGTA
TTTTCCAGCGGGAAATCCACCCTTGATCAAATCAAGAGTCTTAGTTCCACGGACTAAATCAAATCCATATGCAGTGACGCCAGCCAGAGATTTGAGAGTC
TTGTATGCCTCAGCAGGGATGTCAGCAAAGTAGGTGCAAGTTCTACATATGCATCACTAAATGCTTGCAACTTGTGAGCTTCAAGGTCCAAGACAAGGGT
AGGCTCATCAAATTGAATCCATGAAGCACCGGCTGCCTTAAGGTCAGCAATAACTTCCCTGT