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Detailed information on CNT3061966


BLAST search results

BLAST vs Swiss-Prot:
sp|P27985|RBS2_BRANA, E-value = 4e-74

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3075084Arabidopsis lyrataBrassica juncea34.5731.1191.85270forward

Expression of CNT3061966

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MIRDKGKVQCLLPLTRIQHKESTCCGEGSQLP*

>peptide 2 (30 aa)
MEASTLSSTVHRSIRECFRVHGTQIRAINT*

>peptide 3 (88 aa)
MNVLERELSIGEAWGLVGDETDALDLTVVVESDDPNEGIRVLLLAFLHFLQHLSGVGASEQWKLPHCPVPSIVVSGSVSVFTVHKSVL*

>peptide 4 (29 aa)
MEVMSLLALRVTGKAADDFKPENGATMVA*

Sequence

>CNT3061966
GTCTCATAAAGAGAAAACAACACAGACAATAGGAATGAAATAAGCAGAGATAATTTATATGAATGTTTTAGAAAGGGAATTAAGCATCGGTGAAGCTTGG
GGGCTTGTAGGCGATGAAACTGATGCATTGGACTTGACGGTTGTTGTCGAATCCGATGATCCTAATGAAGGCATTAGGGTACTCCTTCTTGCATTCTTGC
ACTTCCTTCAACACTTGAGCGGAGTCGGTGCATCCGAACAATGGAAGCTTCCACATTGTCCAGTACCGTCCATCGTAGTATCCGGGAGTGTTTCCGTGTT
CACGGTACACAAATCCGTGCTATAAACACATAAGAAAACCATTCGATGGACAATGATAGCCTCAACTTTGGTGTAGAAAATAAGCTTATTGACTTTGGTT
TTTAGCTATGTAAGAAAATAATATATAATGATTAGAGACAAAGGAAAGGTTCAGTGTTTATTACCTCTAACTCGAATTCAACACAAGGAATCCACTTGTT
GCGGAGAAGGTAGTCAACTTCCTTAGCCAATTCGACGTCAGTAAGGTCAGGGAGCTAACTCTTCCCCCGTTGCTTGCGATGGAAGTAATGTCGTTGTTGG
CCTTGCGGGTGACCGGGAAAGCAGCGGATGACTTCAAGCCGGAGAATGGAGCGACCATGGTGGCTTGAGCCGGGGAGGTAACCATAGCGGCAGAGGAGAG
CATAGATGAAGCCATCACTACTTCTTGTTGTTTCTTTTACTTGTTTGTCGATTGATTTGGTCATCTTTATATAGTGAGAAC