Detailed information on CNT30619448


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30197509Sesamum indicumPisum sativum77.9438.9791.88887forward
CNT30633270Sesamum indicumCapsicum annuum55.7176.297.16634reverse complement
CNT30299594Sesamum indicumTriticum aestivum21.7932.892.34248forward
CNT30221864Sesamum indicumHordeum vulgare52.0229.1691.22592forward
CNT30385041Sesamum indicumTriticum turgidum21.7936.8592.34248forward
CNT30586133Sesamum indicumMusa acuminata42.2721.7588.57481forward
CNT30541214Sesamum indicumBrassica napus27.15101.6490.61309reverse complement
CNT30439823Sesamum indicumAegilops tauschii25.3164.4392.71288reverse complement
CNT30468144Sesamum indicumSaccharum spontaneum79.5332.1688.84905forward
CNT30210175Sesamum indicumHelianthus annuus11.635.1196.97132forward
CNT30627916Sesamum indicumDaucus carota78.7324.8396.21896forward
CNT30574574Sesamum indicumVitis vinifera42.3614.3296.68482forward
CNT3056786Sesamum indicumAmborella trichopoda17.8425.7990.15203forward
CNT30103415Sesamum indicumOryza rufipogon52.0259.6291.39592forward
CNT30577102Sesamum indicumOryza barthii19.698.2491.48223forward
CNT30115468Sesamum indicumOryza nivara20.566.7891.88234forward

Expression of CNT30619448

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MLKRLDEIELLDLRLCASRARSSNLGQFF*

>peptide 2 (38 aa)
MECNGIDGRGLPTPKSDDSLVPLSIGTSWHTTETTPAR*

>peptide 3 (32 aa)
MKDDRLSTQEDRESHIREKVTNRVEPSNIAKA*

>peptide 4 (37 aa)
MMKKAAKVWRKIWEENKEISEKRRGRQRSSRNVEEAR*

Sequence

>CNT30619448
GTAGGAATAGAGTAGTCTAATTGCGTCTATCACTGAAGGATGGAACAAGATGATGAAGAAGGCGGCGAAGGTATGGAGGAAAATCTGGGAAGAGAACAAG
GAGATCTCTGAAAAGAGAAGAGGGAGGCAAAGAAGTAGTAGAAATGTTGAAGAGGCTCGATGAAATTGAGCTCTTGGACTTAAGACTATGCGCGTCGCGT
GCTCGATCTAGCAATCTTGGACAATTCTTTTGATGAACTGTCACTAAACTAAAAAAGAAAGAAGAGAAAGAACTGGGAGTTTGCGCCTACATAACGGATT
GCTTGCTTACCAAGCCATCCTGGCAAGCTCCTCCTGTTCGATTATTATTCTTGACTTGACTTATTATTATAAAAACTACTCACTATCCAAATGAAAGACG
ATCGATTATCTACCCAAGAAGATAGAGAGTCCCACATACGAGAAAAGGTCACAAATAGAGTTGAACCAAGTAACATTGCAAAGGCATAATGATAGTAGGG
TCGGGATATCCCCGCCCTCCGAACCGGACGTGAAGGTCTCCCCTCATCCGGCTCTCTGCAGGGGAATCTCCACTCACTGCTTCCCCTAATATCCTCCCTT
TATCACATCATGGGGGTTTACAGGAGATCCCAGAGGCTCGCTCGGAAAGGCTGCTATACCATACCTTTTGACTTAACTCTACTCTAGTAGTCACTAGACT
CACTATAGTAGTCCGTCTGGCTGCTCTTGCTGAAATCATTACTCTTCATTCTCCCGTGCTCTAGCAATTGCGCTCCCTAGACCACTACCATGTAGTTAGG
TAGGGACAAGAAATCCGTAGTGACGGGAATCTAGGAATGAATAGGGATCCCAATCAATATAAAAGAATATATAATTAGAGCCCTTTCTCTCACTCAATAG
ATCTATCTGGTCTGATACGGTACAGTACAATACGAGACGATGGAATGCAATGGGATAGATGGTAGAGGGCTGCCTACGCCCAAAAGCGATGATTCACTTG
TCCCCTTGTCCATAGGGACCTCGTGGCATACAACCGAAACGACTCCCGCTAGATAGCCGCCCCTTTCTCTCTTTTTACAGCCTCGTGGACGGACGAAAGA
AGGGAAGTTACAGAACGGGGCAGTGAAGGCTCGCGAAG