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Detailed information on CNT3061914


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30548919Arabidopsis lyrataIpomoea triloba29.1823.9883.76117forward
CNT30376649Arabidopsis lyrataArabidopsis thaliana41.657.5797.01167forward
CNT30525171Arabidopsis lyrataPhaseolus vulgaris21.725.6683.9187forward
CNT30197940Arabidopsis lyrataPisum sativum31.6726.7982.68127forward
CNT30237230Arabidopsis lyrataBrassica oleracea29.4314.0585.59118forward
CNT30312307Arabidopsis lyrataCamelina sativa38.439.5992.21154forward
CNT3075841Arabidopsis lyrataBrassica juncea29.4314.3486.44118forward
CNT30262296Arabidopsis lyrataBrassica rapa29.4314.6486.44118forward
CNT30154218Arabidopsis lyrataPrunus persica23.9427.9983.3396forward

Expression of CNT3061914

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MEDGIEEQRREIENLGFEIFGEEEDLGIE*

>peptide 2 (45 aa)
MVNMTDGSDVDMRLLPLELSTSGADGEGATSGLRSGGRRKRELGF*

Sequence

>CNT3061914
GCTGGAACCAATTGAAGCAAGAGCCATGGTGAGAGCTGCGGTTAAAGTAGTCTTACCATGGTCAACATGACCGATGGTTCCGATGTTGACATGAGGCTTC
TTCCTCTCGAACTTTCCACGAGCGGCGCGGACGGTGAAGGAGCGACGAGTGGATTGAGAAGCGGAGGAAGGAGGAAGAGAGAGTTAGGGTTTTGAGCTTA
CCAGAGGTGGAAATGGCGGGACAGAGAGAAGGAGAAGGAGAAGAGTAGGAGCAGAGAAGTCGAGAGGAAGAAGAACAAGCGGCTGGAGCCGAAATCGCCA
TGGAAGACGGAATTGAAGAGCAGAGGAGAGAAATTGAGAATCTAGGGTTTGAAATTTTTGGAGAAGAAGAAGATTTGGGGATAGAGTGAGATTGTATAGT
G