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Detailed information on CNT3061903


BLAST search results

BLAST vs Swiss-Prot:
sp|P10796|RBS1B_ARATH, E-value = 2e-90

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30712618Arabidopsis lyrataGlycine max20.1732.8880.73192forward
CNT30166270Arabidopsis lyrataPistacia vera19.6428.7382.89187forward
CNT30311891Arabidopsis lyrataCamelina sativa43.849.2390.41417forward
CNT30335392Arabidopsis lyrataCynara cardunculus18.821.9684.36179forward

Expression of CNT3061903

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MQLTLPPLLEIEVMSLLALRVTGKAADDFKPVNGATMVA*

>peptide 2 (46 aa)
MEASTLSSTVHRSIRECFRAHGTQILPLTRIQHKESTCCGEGSQLP*

>peptide 3 (31 aa)
FSKQCSQFLKSKNNEENLNEPECCQKELNEK*

>peptide 4 (37 aa)
MSKYNYKEIDRKNLQIFHFHTIIPQLLSRLINFLNLH*

Sequence

>CNT3061903
ATTTCTCGAAACAATGTAGCCAATTTCTCAAAAGCAAGAATAATGAGGAGAATTTAAATGAACCGGAATGTTGTCAAAAGGAGCTAAACGAAAAATAGAG
CTCAAAGAGCTAGAAGAAAAAAAATGAAATCAAATGAGTAAATATAATTATAAGGAAATTGATAGAAAAAACCTTCAAATTTTTCACTTTCACACAATAA
TTCCTCAACTTTTAAGTCGGCTAATTAATTTCTTAAATTTGCATTGACCACATAGAATTGGATTCCGAAATACTAGTCAACGTTGAACATTCCAGAAAGG
GAATTAAGCATCGGTGAAGCTTGGGGGCTTGTAGGCAATGAAACTGATGCATTGGACTTGACGGTTGTTGTCGAATCCGATGATCCTAATGAAGGCATTA
GGGTACTCCTTCTTGCATTCTTGCACTTCCTTCAACACTTGAGCAGAATCGGTGCATCCGAACAATGGAAGCTTCCACATTGTCCAGTACCGTCCATCGT
AGTATCCGGGAGTGTTTCCGTGCTCACGGTACACAAATCCTACCTCTAACTCGAATTCAACACAAGGAATCCACTTGTTGCGGAGAAGGTAGTCAACTTC
CTTAGCCAATTCGACGTCAGTAAGGTCAGGGAGGTAAGATAGAGTCTCAAACTTCTTCTTTCCAATTGGTGGCCACACCTATAACTCCCAATTCCAATTA
TTCTAAGTTTTGTTCAATTTCACTAATTACACATGACAAAATACAGTTTTTATAGGACATTACCTTCATGCAGCTAACTCTTCCGCCGTTGCTTGAGATA
GAAGTAATGTCGTTGTTGGCCTTGCGGGTGACCGGGAAAGCAGCGGATGACTTCAAGCCGGTGAATGGAGCGACCATGGTGGCTTGAGCTGGGGAGGTAA
CCACAGCGGCAGAGGAGAGCATAGAGGAAGCCATCACAACTTCTTCTTCTTT