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Detailed information on CNT3061892


BLAST search results

BLAST vs Swiss-Prot:
sp|P10796|RBS1B_ARATH, E-value = 4e-58

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3077965Arabidopsis lyrataBrassica juncea41.5339.5587.31331forward
CNT30613234Arabidopsis lyrataArabis alpina59.182.6387.05471forward
CNT30705707Arabidopsis lyrataPrunus avium28.7320.3282.1229forward
CNT30115242Arabidopsis lyrataEutrema salsugineum23.3437.1394.09186forward

Expression of CNT3061892

Peptides detected in this lncRNA

>peptide 1 (88 aa)
MNVLERELSIGEAWGLVGDETDALDLTVVVESDDPNEGIRGTPSCTLALPSTLERSRCIRTMEASTLSSTVHRSIQESTCCGEGSQLP*

>peptide 2 (68 aa)
MILMKALGVLLLALLHFLQHLSGVGASEQWKLPHCPVPSIVVSRNPLVAEKVVNFLSQFDVSKVREVR*

>peptide 3 (39 aa)
MQLTLPPLLEIEVMSLLALRVTGKVADDFKPVNGATMVA*

Sequence

>CNT3061892
GCAATAAAAATTCTAAACCTAATTAAGCATCGGAAAAATCAAGACGCAAGAATATATAAAATACATATTCATAAATCAGACATTTGACAATCCGATATAA
AATGTCTCATAAAGAGAAAACAACACAGACAATAGGAATGAAATAAGCAGAGATAATTTATATGAATGTTTTAGAAAGGGAATTAAGCATCGGTGAAGCT
TGGGGGCTTGTAGGCGATGAAACTGATGCATTGGACTTGACGGTTGTTGTCGAATCCGATGATCCTAATGAAGGCATTAGGGGTACTCCTTCTTGCACTC
TTGCACTTCCTTCAACACTTGAGCGGAGTCGGTGCATCCGAACAATGGAAGCTTCCACATTGTCCAGTACCGTCCATCGTAGTATCCAGGAATCCACTTG
TTGCGGAGAAGGTAGTCAACTTCCTTAGCCAATTCGACGTCAGTAAGGTCAGGGAGGTAAGATAGAGTCTCAAACTTCTTCTTTCCAATTGGTGGCCACA
CCTATAACTCCCAATTCCAATTATTCTAAGTTTTGTTCAATTTCACTAATTACACATGACAAAATACAGTTTTTATAGGACATTACCTTCATGCAGCTAA
CTCTTCCGCCGTTGCTTGAGATAGAAGTAATGTCGTTGTTGGCCTTGCGGGTGACGGGGAAAGTAGCGGATGACTTCAAGCCGGTGAATGGAGCGACCAT
GGTGGCTTGAGCTGGGGAGGTAACCACAGCGGCAGAGGAGAGCATAGAGGAAGCCATCACAACTTCTTCTTCTTTTGCTCTTTTCTCTTACTTAATT