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Detailed information on CNT3061849


BLAST search results

BLAST vs Swiss-Prot:
sp|P31853|ATPF2_SPIOL, E-value = 8e-37

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30376647Arabidopsis lyrataArabidopsis thaliana55.6152.1797.37228forward
CNT30381141Arabidopsis lyrataManihot esculenta45.3735.5680.11186forward

Expression of CNT3061849

Peptides detected in this lncRNA

>peptide 1 (60 aa)
MIGSVRLKSKSCAFSIASAIDGGAKAAIRAKDLAVADESDRALLRRSVEEVRRLGVWKKP*

>peptide 2 (47 aa)
SFFILLSAAAISALAALITAAAFSSSSFTSAEVSLTLASFSLMEASL*

>peptide 3 (77 aa)
LLLHLVKRGGDLSPSCSHHGGGFLIELLYLSRSVLNTRELLFDGSVSLIHKVTKRRVIDFVECEHQEEKLNNDDRKR*

Sequence

>CNT3061849
CTCCTTCTTCATCTTGTTAAGCGCGGCGGCGATCTCAGCCCTAGCTGCTCTCATCACGGCGGCGGCTTTCTCATCGAGCTCCTTTACCTCAGCCGAAGTG
TCCTTAACACTCGCGAGCTTCTCTTTGATGGAAGCGTCTCTTTGATCCATAAAGTTACCAAGCGGAGAGTAATAGACTTTGTCGAGTGCGAACATCAAGA
AGAGAAACTCAACAACGATGATCGGAAGCGTTAGATTGAAATCGAAGAGCTGTGCTTTCTCCATCGCCTCCGCCATTGACGGTGGAGCGAAGGCGGCGAT
TAGAGCTAAGGATTTGGCGGTGGCGGATGAGAGTGATAGAGCTTTGCTACGGAGATCGGTGGAGGAAGTGAGGAGATTAGGGGTTTGGAAGAAGCCATAA
TCGAATTAGC