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Detailed information on CNT3061832


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30380061Arabidopsis lyrataManihot esculenta31.2725.4682.2996forward
CNT30630708Arabidopsis lyrataVigna unguiculata21.1725.2989.2365forward
CNT30503251Arabidopsis lyrataNicotiana attenuata54.7219.3183.93168forward
CNT30712704Arabidopsis lyrataGlycine max21.518.1392.4266forward
CNT30544306Arabidopsis lyrataBrassica napus50.8144.792.95156forward
CNT3077810Arabidopsis lyrataBrassica juncea4321.1991.67132forward
CNT30264219Arabidopsis lyrataBrassica rapa36.1622.1189.19111forward
CNT30216944Arabidopsis lyrataKalanchoe fedtschenkoi40.0717.4781.3123forward
CNT30479805Arabidopsis lyrataArabidopsis halleri50.8151.3298.08156forward
CNT30322408Arabidopsis lyrataAsparagus officinalis55.0519.4579.29169forward

Expression of CNT3061832

Peptides detected in this lncRNA

>peptide 1 (55 aa)
RRFRWRFFNIVKRSSNRTKCTFWKLLKGRNGLESRSSLGSSSDDSKFSTGPSPVT*

>peptide 2 (43 aa)
MKKPSIANMANLPFLISLTLRRAPCSGSLASPRGSNGPPGCSLS

Sequence

>CNT3061832
AAGAAGATTCAGATGGAGGTTTTTTAACATTGTCAAAAGGAGTTCCAATCGAACAAAGTGTACATTTTGGAAGCTCTTAAAAGGAAGAAATGGCTTAGAG
AGTAGGAGCTCTCTCGGCAGTTCCAGCGATGACAGTAAGTTCTCAACTGGACCTTCTCCGGTAACATAAGCTTGGATGAAGAAACCGAGCATTGCAAACA
TGGCTAATCTCCCGTTCTTGATCTCTTTGACCTTGAGAAGAGCTCCTTGCTCAGGGTCCTTAGCGAGTCCTAGAGGATCAAATGGACCTCCTGGATGTAG
CTTGTCC