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Detailed information on CNT3061830


BLAST search results

BLAST vs Swiss-Prot:
sp|Q1EC66|UBQ3_ARATH, E-value = 6e-156

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30312763Arabidopsis lyrataCamelina sativa53.8150.5390.48756forward
CNT30612915Arabidopsis lyrataArabis alpina49.1870.9484.8691forward
CNT3024066Arabidopsis lyrataPopulus trichocarpa48.973.9583.7687forward
CNT30120618Arabidopsis lyrataCitrus clementina46.4870.6784.07653forward
CNT30111703Arabidopsis lyrataFicus carica46.5571.0183.79654forward

Expression of CNT3061830

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MSSQRSAYHHADATQGEVSTPSGCCSQQEFFHPQAAYRQR*

>peptide 2 (32 aa)
METEPNQVKNITSSPPKCMTQRTATFDQITKA*

>peptide 3 (30 aa)
MVLPVRVLTKICIPPLKRRTKWRVDSFWIL*

Sequence

>CNT3061830
CTCACATCAAACTCGTCATATGTAAAGAGCAAAAATCAATGTTTAAAATGCACTTGGATTATTATTGAAAGTTGAAAGACAAAGGCCCGTTACGAGCCCA
ACCAAAAGTTCATAAGAACATACAAGAAAAGCAGACGATGAAACTTAAAACAACTAAAGGGACAAGTTTTTCCCGCAGATGGAAACAGAACCAAACCAGG
TGAAGAACATCACATCATCACCTCCCAAGTGCATGACACAGAGAACCGCCACTTTTGATCAGATCACAAAAGCTTAGAAGCTTCCACCACGAAGACGGAG
AACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCTGCAAGAGTCCGACCATCCTCAAGCTGTTTTCCAGCGAAGATGAGTCTCTGCTGATCCGGA
GGGATCCCTTCCTTGTCCTGAATCTTAGCCTTGACGTTATCAATTGTGTCTGAGCTCTCAACCTCCAGGGTAATAGTCTTGCCTGTCAATGTCTTCACAA
AGATCTGCATACCACCACGCAGACGCAACACAAGGTGAAGTGTCGACTCCTTCTGGATGTTGTAGTCAGCAAGAGTTCTTCCATCCTCAAGCTGCTTACC
GGCAAAGATAAGCCTCTGCTGGTCCGGAGGGATTCCTTCTTTGTCCTGAATCTTTGCTTTGACGTTGTCAATAGTGTCAGAGCTCTCAACTTCCAAAGTA
ATGGTCTTGCCAGTCAGAGTCTTGACAAAGATCTGCATACCACCTCTTAAACGAAGAACCAAGTGGAGGGTTGATTCTTTCTGGATATTGTAATCGGTCA
AGGTACGACCATCTTCTAGCTGTTTACCGGCGAAGATTAATCTCTGCTGGTCCGGAGGAATGCCTTCCTTGTCCTGAATCTTTGCCTTAACATTGTCGAT
GGTGTCAGAGCTCTCAACCTCGAGAGTGATGGTCTTGCCAGTGAGTGTTTTCACAAAGATTTGCATCTGAAATTAAAAAAGAGAACACGTAAAAATCGAT
CAGGGAACATATACCAAAGAGAAAACGGATTTAAACACAAGAACCCAAAATCAAAGAGAATCGACAAAGAAAACACAAAATTGAATAGATCGTTATAGAA
AACCCTAATTTCCTTAAGAGAATTTCAAAACCAAGCAAGAAATTGAACAGATCTAAACGATATGCTTCATAAGAGAAAACGCAAGAAAGATGGAATATTT
CAACAACATGCAAATCTGACGAGCAACTAATAGAGATTCTTAGTAATCGACATAAAATAAAGAAGCTGGGATTGAAGAAACGAGCAGGTAATTTTCGAAA
ATCAAATTATTGAAAAATCCAATCACCCAAAAATCCAAAATCGAAGATCAAAAAAGAAAACCAAATCCAAAGATCAGACGCCAAAACCCAGAAGAAACGA
ATCAG