Detailed information on CNT30617739


BLAST search results

BLAST vs Swiss-Prot:
sp|Q942D4|BURP3_ORYSJ, E-value = 1e-79

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30500761Sesamum indicumCoffea canephora8.1929.9789.11101forward
CNT30381137Sesamum indicumManihot esculenta7.9525.9982.6598forward

Expression of CNT30617739

Peptides detected in this lncRNA

>peptide 1 (86 aa)
MQPCPGGTPPQPPPSTHRLPPFQPCKQPLCPSHDSRTLHMHTLACGRPPLLSYSAFCSLQQYGTLSSVQFLHWLILLPHLYLAWRC*

>peptide 2 (38 aa)
MWPHLCSWRNASSSACLCASLSLRRKGPRLGCHASEFR*

>peptide 3 (42 aa)
AHLNSTYGRKTACGQHFSLSSVFWLCVAGMHSQSNLDEANRT*

>peptide 4 (88 aa)
MHLSFGSSIQVVEGIWTWLHPNVNGFTLSGAGSNAHSTFPNAYIGPAAGFASVDSDATTADVHTSASRLAPPGVNAHSALAYPNGGAFV

>peptide 5 (47 aa)
MPTLVRLPGLPVWTPTPPRPTYTPVPPGLPLPVLTRTPPLLTPTVVLL

>peptide 6 (46 aa)
MLQLLLMFGFTYASGRIQASSSLMGREMDHPVRYIYHANSNSFSST*

>peptide 7 (96 aa)
MDSKEVAQNFSSPFMPFSSHSLMVFLIASASSEPGFTENLSRISGSLFEEKGIESATWRGKNVASFVLLEKRKLIRLPMCKSFSKKKRATFGLSCI*

>peptide 8 (95 aa)
MADWHSPWLHLEHLKSQVLGVPCSRVPVAHRHSLRLRPIGCHHFNLVSNRCVRLMTVEHCICILLPVADHRCFRTRPSVHFNNMVLFLLSSFCIG*

Sequence

>CNT30617739
GTGCTCACCTCAATAGCACTTACGGGAGGAAAACTGCATGTGGCCAACATTTCAGTCTAAGCAGTGTCTTTTGGCTCTGTGTAGCAGGCATGCACAGTCA
ATCAAACTTGGATGAAGCTAATAGGACTTAAATCAATCCTTCTTGAGGAGTTGCCTTTTCCCCATTGAACTTAAGTTTCATGCTTCAGCTTCTGCTCATG
TTTGGTTTCACCTATGCTTCTGGCAGAATTCAGGCATCATCCAGTTTGATGGGGAGGGAAATGGATCATCCAGTACGGTATATATATCATGCAAACAGCA
ACTCATTTTCTAGTACCTAGGAATCCAAACAATGTGATCCTCAGGTAGAAAATGGCAGACTGGCACAGTCCCTGGCTTCACCTTGAGCACCTGAAAAGCC
AAGTGCTTGGGGTTCCATGCAGCCGTGTCCCGGTGGCACACCGCCACAGCCTCCGCCTTCGACCCATCGGCTGCCACCATTTCAACCTTGTAAGCAACCG
TTGTGTCCGTCTCATGACAGTAGAACACTGCATATGCATACTCTTGCCTGTGGCAGACCACCGCTGCTTTCGTACTCGGCCTTCTGTTCACTTCAACAAT
ATGGTACTCTTTCTTCTGTCCAGTTTCTGCATTGGTTGATATTGCTTCCACATCTTTACCTAGCTTGGAGGTGCTGAAATCAACCATGGACTCTAAAGAA
GTTGCACAAAATTTCTCTTCTCCTTTTATGCCTTTCTCCTCGCATTCTTTAATGGTTTTCTTGATCGCCTCTGCTTCATCTGAACCAGGGTTCACTGAGA
ACTTGTCCAGAATCTCTGGCAGCTTATTCGAGGAGAAGGGTATCGAATCAGCAACTTGGCGGGGCAAAAATGTGGCCTCATTTGTGCTCTTGGAGAAACG
CAAGCTCATCCGCTTGCCTATGTGCAAGTCTTTCTCTAAGAAGAAAAGGGCCACGTTTGGGTTGTCATGCATCTGAGTTTCGGTAGCAGCATACAGGTAG
TTGAAGGGATCTGGACCTGGCTTCACCCGAACGTAAACGGGTTTACCCTTTCTGGTGCCGGTTCCAACGCTCACTCCACCTTTCCCAATGCCTACATTGG
TCCGGCTGCCGGGTTTGCCAGTGTGGACTCCGACGCCACCACGGCCGACGTACACACCAGTGCCTCCAGGCTTGCCCCTCCCGGTGTTAACGCGCACTCC
GCCCTTGCTTACCCCAACGGTGGTGCTTTTGTC