Detailed information on CNT30617716


BLAST search results

BLAST vs Swiss-Prot:
sp|A7Y3B9|RPOB_IPOPU, E-value = 5e-77

BLAST vs NONCODE:
NONMEST001055, E-value = 1e-126

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3082978Sesamum indicumBrassica juncea90.054.6884.21380forward
CNT3052251Sesamum indicumAmborella trichopoda42.183.0383.71178forward

Expression of CNT30617716

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MFNKMNEGSSNRKILEGKNTSKMNPFPCNSQEFLTVSS

>peptide 2 (61 aa)
MECLEYLHSLRKGSCQYLYKRSFPHIQLAQEPLNLEPPVVPTQFQQCISRTETTELPDVAY*

Sequence

>CNT30617716
CTAAAATTTGTCCCTTTTTAATGCATTTACCCTGTTGAACCTGGGGTTTTTGATGCATACAAGAATTTTTGTTGGAACGTTGATACATAACTAATGGAAT
GTTTAGAGTATCTCCATTCCCTGAGAAAAGGATCTTGTCAGTATCTATATAAACGATCTTTCCCCCACATTCAGCTAGCGCAAGAGCCCCTGAATCTAGA
GCCGCCTGTCGTTCCAACCCAGTTCCAACAATGCATTTCTCGGACCGAGACCACGGAACTGCCTGACGTTGCATATTAGAACTCATTAAAACCCTATTCG
CATCATTATGTTCAATAAAATGAATGAGGGAAGCTCCAATAGAAAAATATTGGAAGGGAAAAATACTTCAAAGATGAACCCGTTCCCATGCAATAGTCAG
GAATTCTTGACGGTATCGAGCT