Detailed information on CNT30617555


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30523223Sesamum indicumSetaria italica21.7626.3182.44131forward
CNT30515591Sesamum indicumJuglans regia21.2624.6684.38128forward
CNT30729972Sesamum indicumCorchorus capsularis23.922582.64144forward
CNT30710175Sesamum indicumGlycine max21.5932.8386.92130forward
CNT30290105Sesamum indicumTriticum aestivum21.2628.1985.16128forward
CNT30387749Sesamum indicumTriticum turgidum21.2620.0984.38128forward
CNT30246208Sesamum indicumAvena sativa20.7622.0582.4125forward
CNT30659185Sesamum indicumTriticum dicoccoides21.2624.0284.38128forward
CNT30134237Sesamum indicumLolium perenne21.2620.3584.38128forward
CNT30620908Sesamum indicumCajanus cajan22.7619.389.78137forward
CNT30723703Sesamum indicumLupinus angustifolius21.4317.8982.17129forward

Expression of CNT30617555

Peptides detected in this lncRNA

>peptide 1 (60 aa)
MDPTPSACPSHGWPPRSAPPPHPTPPRSCHWADVHPAVAKLGGAPLPWAVEQRKLDCMRF*

>peptide 2 (47 aa)
MAGRRAQLLHLIPRRRAAATGRTYIRPWLNWVVHLFHGLLSNENLTA*

Sequence

>CNT30617555
TATGGATTCTGTTCGGTTGTACAAATAGCTGTAAATCTAAATTTGGAATATTTCATGTAATTTGTAGTATAAATCATCAAACAGATTAATCACCAATAGC
ACTTACAGAGTATTGTATATGCTTTAATTAATCATCCCAAACGGATCCAAAGTGCTGTCACTAATACCTTCAAGATCAGAGTCCCAGACAACAGGTTTAT
ACCCAAACCCATAACCACAATAACAGACTATAGCAATAATCAATTATCATAAGTGCGGCACTCATCGGTCTCCGGGTTGTCCTTGCAGAAATTCTCCAAT
GGATCCGACTCCTTCTGCTTGTCCCTCGCATGGCTGGCCGCCGCGCTCAGCTCCTCCACCTCATCCCACGCCGCCGCGCAGCTGCCACTGGGCGGACGTA
CATCCGGCCGTGGCTAAATTGGGTGGTGCACCTCTTCCATGGGCTGTTGAGCAACGAAAACTTGACTGCATGAGGTTTTGAGGAATCTGATAGCTTGGCG
AAGACTTTTGGGGTTGTGATACTAACTCCGGCCACCGCTGCCATTATCGAATTCTGACAAACTGCTACTCCTTTCTTCAGTGGTAAAGCGCCTAAAATCT
TG