Detailed information on CNT30617447


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673747Sesamum indicumSetaria viridis45.9590.6790.07272reverse complement
CNT30521637Sesamum indicumSetaria italica44.5951.9793.94264reverse complement
CNT30712450Sesamum indicumGlycine max39.1981.6990.52232reverse complement
CNT30562726Sesamum indicumActinidia chinensis30.4145.3492.22180reverse complement
CNT30604668Sesamum indicumOryza punctata44.0959.4590.42261reverse complement

Expression of CNT30617447

Peptides detected in this lncRNA

>peptide 1 (53 aa)
ERSCFSWEYGVGYFSAVAPGARTLARGIFSTPSYPEKAGAPYVLEPITIFRLT*

>peptide 2 (35 aa)
GALLLFLGVWRGLLQRRSAWCSNIGSRHFLYPFLP*

Sequence

>CNT30617447
AGGAGCGCTCTTGCTTTTCCTGGGAGTATGGCGTGGGTTACTTCAGCGCCGTAGCGCCTGGTGCTCGAACATTGGCTCGAGGCATTTTCTCTACCCCTTC
TTACCCTGAAAAAGCAGGGGCACCTTACGTTCTTGAACCGATAACCATCTTTCGGTTAACCTAGCCTGCTCTGTCCCTCGGGACCAACAAGGGGTAGTAC
AGGAATATTCACCTGTTGTCCATCGACTACGCCTTTCGGCCTGATCTTAGGCCCTGACTCACCCTCCGTGGACGAACCTTGCGGAGGAACCCTTAGGTTT
TCGGGGCATTGGATTCTCACCAATATTTTCGTTACTCGTGCACGGAATTAAAGAAGAGGAGGTTGCCTGATGGGACGTCGGCCTTTTCTTGGACTTTGCC
GAGTTGGGTTCTATGGAAATTTCCAGGTAAGATGCTGACTTTGCCGGGGTTGAACCCCTCCAGTCCAGGAGTTGCAGAAGGATCTAGGCAAGTAAAGAAC
TAATCTGATGCGCAGATGTTTGAAGAACTAAGCGCAGTTGGAGGAAGGGTACTATTAAAGGCCTGCAGTCACTTCAGGGATTAGCTCTGCAG