Detailed information on CNT3061726


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH33|UBQ11_ARATH, E-value = 1e-99

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30376918Arabidopsis lyrataArabidopsis thaliana65.6758.3288.25417forward
CNT30312659Arabidopsis lyrataCamelina sativa69.7622.592.55443forward
CNT3074551Arabidopsis lyrataBrassica juncea69.1348.5190.43439forward
CNT30260853Arabidopsis lyrataBrassica rapa69.1348.8990.66439forward
CNT30477817Arabidopsis lyrataArabidopsis halleri72.643.0896.75461forward

Expression of CNT3061726

Peptides detected in this lncRNA

>peptide 1 (52 aa)
MRRCWSGGIPSLSWILAFTLSMVSELSTSRVMVFPVRVFTKICIPPRSLSTK*

>peptide 2 (43 aa)
EEVRFVIRKKGITGTETEFINYLSGALQGPKTQTTKFFKRNET*

Sequence

>CNT3061726
GGAAGAAGTTCGATTTGTCATTAGAAAGAAAGGGATAACAGGAACGGAAACAGAGTTCATCAATTATTTATCAGGAGCTTTACAAGGCCCCAAAACACAA
ACCACCAAATTTTTTAAAAGAAACGAGACATGAACTTCTTTAACCATAACAGAGACGAGATTTAGAAACCACCACGGAGACGGAGCACCAAGTGAAGAGT
AGACTCCTTTTGGATATTGTAGTCAGCCAAGGTGCGACCATCCTCAAGCTGTTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGGATACCTTCCTTG
TCCTGGATCTTGGCCTTCACGTTGTCAATGGTGTCAGAGCTCTCTACCTCGAGGGTAATGGTCTTCCCGGTCAGAGTCTTCACGAAAATCTGCATACCAC
CACGAAGCCTTAGCACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCCGCCAAAGTACGACCATCCTCCAACTGTTTTCCGGCGAAGATCAACCT
CTGCTGGTCCGGAGGGATACCTTCCTTATCCTGGATCTTGGCCTTCACGTTGTCAATAGTGTCTGAACTCTCCACCTCCAAGGTGATGGTCTTTCCGGTG
AGAATCAACCTCTGCTGGTCCGGAGGAATACCCTC