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Detailed information on CNT30617135


BLAST search results

BLAST vs Swiss-Prot:
sp|Q76H85|H4_SILLA, E-value = 8e-45

BLAST vs NONCODE:
NONGMAT001327, E-value = 5e-45

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696576Sesamum indicumOryza sativa21.1447.0184.91212forward
CNT30671259Sesamum indicumSetaria viridis25.1261.6184.92252forward
CNT30523218Sesamum indicumSetaria italica29.3153.8584.35294forward
CNT30317753Sesamum indicumCorylus avellana28.6141.2483.97287forward
CNT30198984Sesamum indicumPisum sativum16.3522.4482.93164forward
CNT30712284Sesamum indicumGlycine max16.9536.1784.71170forward
CNT3042757Sesamum indicumPrunus dulcis28.4147.0384.91285forward
CNT3092650Sesamum indicumSolanum tuberosum14.6638.2881.63147forward
CNT30178072Sesamum indicumSecale cereale29.4154.4383.73295forward
CNT30286550Sesamum indicumTriticum aestivum29.4148.8484.75295forward
CNT30219776Sesamum indicumHordeum vulgare24.0357.2482.99241forward
CNT30386576Sesamum indicumTriticum turgidum29.4150.3483.73295forward
CNT30563984Sesamum indicumActinidia chinensis14.8671.6387.25149forward
CNT30553196Sesamum indicumOryza glaberrima21.1437.9985.85212forward
CNT30435717Sesamum indicumAegilops tauschii29.4148.684.75295forward
CNT30244338Sesamum indicumAvena sativa30.9155.8684.84310forward
CNT30656490Sesamum indicumTriticum dicoccoides29.4147.7384.75295forward
CNT3059678Sesamum indicumArabidopsis lyrata16.9535.3485.88170forward
CNT3082467Sesamum indicumBrassica juncea28.7140.1782.29288forward
CNT30261175Sesamum indicumBrassica rapa26.2255.7283.27263forward
CNT30611328Sesamum indicumArabis alpina16.0535.3181.99161forward
CNT30471244Sesamum indicumSaccharum spontaneum29.4130.8384.75295forward
CNT30139599Sesamum indicumLolium perenne30.9164.8583.23310forward
CNT3015042Sesamum indicumZea mays19.6433.2884.77197forward
CNT30229571Sesamum indicumAnanas comosus13.9633.9887.14140forward
CNT30211318Sesamum indicumHelianthus annuus28.1272.4979.43282forward
CNT30679384Sesamum indicumTriticum urartu29.4148.6884.07295forward
CNT30720165Sesamum indicumTriticum spelta11.9625.5989.17120forward
CNT30348363Sesamum indicumEragrostis tef31.3156.3785.03314forward
CNT30596905Sesamum indicumOryza meridionalis19.6432.484.26197forward
CNT30370989Sesamum indicumOryza glumipatula27.424483.64275forward
CNT30325970Sesamum indicumAsparagus officinalis22.9333.3388.26230forward
CNT30331117Sesamum indicumDioscorea rotundata22.6323.9781.5227forward
CNT30147953Sesamum indicumBrachypodium distachyon31.3136.1383.44314forward
CNT30101647Sesamum indicumOryza rufipogon28.9131.1284.48290forward
CNT30577582Sesamum indicumOryza barthii19.6430.9784.26197forward
CNT30581397Sesamum indicumEchinochloa crusgalli19.6433.5685.79197forward
CNT30496126Sesamum indicumDigitaria exilis30.9145.5984.19310forward
CNT30117618Sesamum indicumOryza nivara21.1447.1185.38212forward

Expression of CNT30617135

Peptides detected in this lncRNA

>peptide 1 (52 aa)
MFHYSESFNYTTKSKDPQTTRREPSKREAKISRRSRTVCGPASSKHRQRPWR*

>peptide 2 (44 aa)
MTIRVIWWDWILAVHTMRSTEENHLLFYICWIDDVDLLWVIRAE*

>peptide 3 (37 aa)
MDGQDDYPRDLVGLDFSRTYHEIDGGESFTVLHMLDR*

>peptide 4 (80 aa)
MTFSRNILRTPLVSSYIRPLILFTPPLLARRRIAGFVMPWMLSRSTLRCRFAPPLPSPLPPFPRPDIFHRQKRRDEILKG*

Sequence

>CNT30617135
GGAAAAAGAAAACTTGTTTTTTATGAGCTGAATTGAAAATAATTCAATATAATTAAATCCATTTTACATAATAAGCAGCAGCAGCACCTGAATCTAATGT
TTCACTACTCGGAATCATTCAATTATACAACAAAAAGCAAAGACCCACAAACCACAAGAAGAGAACCCAGTAAAAGAGAAGCAAAGATCAGCCGCCGAAG
CCGTACAGTGTGCGGCCCTGCCTCTTCAAAGCATAGACAACGTCCATGGCGGTGACCGTCTTCCTCCTGGCGTGCTCGGTGTAGGTCACGGCGTCTCTGA
TGACGTTCTCCAGGAATATCTTGAGAACTCCCCTCGTCTCCTCGTATATCAGACCGCTGATTCTCTTCACTCCGCCTCTCCTCGCCAGACGCCGGATCGC
CGGCTTCGTTATGCCCTGGATGTTGTCGCGGAGCACCTTACGGTGTCGTTTCGCTCCGCCCTTGCCCAGCCCCTTGCCTCCCTTCCCACGTCCCGACATT
TTTCACCGACAGAAACGGAGGGATGAAATCTTGAAGGGGTAATTGCCTGTGAATTGTGAAAATGGGGAAGATTAGTTCTGGGTTAAATAGAGAGGAGAGA
ATCGTTTTCCGGATGATTTGAATTTTTGGTTTCAGGGTTTTTGGCGCAAATTGTTTGAGCTTTTGGGTTTTGGATTTGGGATTGATGGACGGCCAGGATG
ACTATCCGCGTGATTTGGTGGGATTGGATTTTAGCCGTACATACCATGAGATCGACGGAGGAGAATCATTTACTGTTCTACATATGCTGGATCGATGACG
TGGATTTGCTTTGGGTGATTAGGGCTGAATAAAGTTACGGGCTAATTTGAGGAATTTTGGTTTGAACTTTGACTTCGCAAATTTCTATCATAATCCATTA
GTAATACTTATGTTACAAATAATCCAATCAAAGGTTGTGTTTGCAATGATTGATTTGATTCAGTTAAGAATTTAAATAATAGATTTCAAATTTTTTGAGT
TCC