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Detailed information on CNT30616510


BLAST search results

BLAST vs Swiss-Prot:
sp|P07398|RBS3_WHEAT, E-value = 7e-33

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30629734Sesamum indicumVigna unguiculata13.8421.4481.68191forward
CNT30543822Sesamum indicumBrassica napus5.9428.2889.0282forward
CNT30508846Sesamum indicumSolanum lycopersicum7.120.5982.6598forward
CNT30313480Sesamum indicumCamelina sativa13.1229.7282.32181forward
CNT3059910Sesamum indicumArabidopsis lyrata13.3335.1183.15184forward
CNT3075084Sesamum indicumBrassica juncea13.1920.9781.32182forward
CNT30261376Sesamum indicumBrassica rapa5.9420.587.882forward
CNT30613234Sesamum indicumArabis alpina13.7733.3382.11190forward
CNT30605276Sesamum indicumGossypium raimondii13.1946.0882.97182forward
CNT30176025Sesamum indicumVigna angularis13.4128.9180.54185forward

Expression of CNT30616510

Peptides detected in this lncRNA

>peptide 1 (50 aa)
MKLMHWTWRTLSNPMILTKASGCALTASSTSSNTWAESVHPYMGNFHIVQ*

>peptide 2 (69 aa)
MFTCMHCTLPPLLATEVMSLDFLATGRPEVDLRPVNGATMLAWAGLARAATAAVEEITEDAICYRFVSL*

>peptide 3 (31 aa)
MIPVGDQATRKRVPRGGRLSFLSDHPHHQEVK

Sequence

>CNT30616510
AATCAATTGACTTTTAGGAAGATAAAACAAGTTCGAATTGGGTACACTTGTTCTCAACAACAAACACCAAATCCATAAAAAATGGAGAGAAAAAACGACA
CAGAAAAACAAAGGTACAAGATGAGTCTCTTATGAATTTTAGTAGCCCGGTGGCTTGTAGGCAATGAAACTGATGCACTGGACTTGGCGCACGTTGTCGA
ATCCAATGATTCTAACGAAGGCGTCAGGGTGTGCCCTTACAGCCTCGTCAACCTCCAGCAACACTTGGGCGGAGTCAGTGCACCCGTACATGGGCAACTT
CCACATTGTCCAGTAACGTCCGTCGTAGTACCCTGGTGACCTGTGGCGTCAGGGTGTGCCCTTACAGCCTCGTCAACCTCCAGCAACACTTGGGCGGAGT
CAGTGCACCCGTACATGGGCAACTTCCACATTGTCCAGTAACGTCCGTCGTAGTACCCTGGTGACCTGTGGTTTTCACGGTACACAAATCCGTGCTGCAT
ATATATAAACATAATAAATTGTAAATAAATCTTTAAAATTGTGCACATATATGTATGTATAATGTGACTAATGTTAAGAGAACCTCGAGCTCGAACTCGA
CGCAAGGAATCCATTTGGAGCGGATAAGGTAGTCAATTTCCGAAGCCAACTGCTCTCTGGTTAGGTCAGGAAGGTAGGAAAGAGTCTCAAACTTCTTCTT
CCCTTGTGTGGGCCACACCTGCATTTTTCCAAATCTTTAAGTTCCAATCATTTTATTAAGTGCTAGTGCACGCGCGCGCGCACACACACGAATGAATTCA
GGAAAAAATTCTAGCCGAGATTCGATTTAGCCAAATTTGAACCGTATAGTACATTTATCTTGCAATTGGTATACGATTTAATGAAAGAATCCATGAGTGT
ATCACACTAACTGGCAGATTGGTTGATAAGTTCGACTAAACCTGATTTTAAATTAAAATTTATCATAGATTCAAATATAAATGTTCACCTGTATGCACTG
CACTCTTCCCCCGTTGCTAGCAACAGAAGTAATGTCGTTGGACTTCCTAGCGACGGGAAGGCCAGAAGTCGACTTGAGACCAGTGAACGGTGCGACCATG
CTAGCCTGGGCAGGGCTGGCACGGGCGGCGACCGCGGCGGTTGAGGAAATCACAGAGGATGCCATTTGCTATAGATTTGTTTCACTCTAACTCTCTTCAC
TGCCCTTGAGGACTATCCAAACAGCCCCCACTGCCCATTTATAGAGCCTTGGAAAACACACTCAATCGAGCTGTGTGGTTCCTGATGATCCCTGTTGGAG
ATCAGGCAACACGTAAGAGAGTGCCACGTGGCGGCAGATTATCTTTCTTATCTGATCATCCTCATCATCAAGAAGTAAAA