Detailed information on CNT30616141


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9FE67|ERF80_ARATH, E-value = 4e-24

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30474096Sesamum indicumSaccharum spontaneum9.624.9384.2195forward
CNT30572283Sesamum indicumVitis vinifera9.920.7686.7398forward

Expression of CNT30616141

Peptides detected in this lncRNA

>peptide 1 (78 aa)
MSPGWRTPPNCSGSLLRCVECPKPNAALLAGIPDLGGVPAPRPLPHPTKVHFIITASGGRRRPDPWRHDMYTVVQLDV*

>peptide 2 (85 aa)
MILTNPPAEDAATAAAGRWLWLFWKGNLIRRRPRVRSNSVESGTATATATGGNVSRLEDSTELLWQPPPLCRMSQAKRGSSCRDP*

>peptide 3 (51 aa)
MPLLSGDLGRSTTADDESDSLCAALPPWNSAGTRRSLFISSMISCRDSGRR*

>peptide 4 (39 aa)
MKQTECAVNRTTAPNRVGFSIWASRIKRGKLALTIHIQR*

>peptide 5 (37 aa)
MMERFWGRSSKIFWRREVEIQIDAFAERRFGQVDDGG*

Sequence

>CNT30616141
TAATTAAATTTGTTTAAGCTAAGAGAGCAGGAAATTACATTGGGATGAAGCAGACAGAGTGTGCAGTTAATAGGACAACAGCCCCAAATCGGGTCGGGTT
TTCCATTTGGGCGTCGCGGATCAAAAGGGGGAAATTAGCTTTAACTATTCACATCCAACGGTGAGCTTTTAATCACATCACAAAAACAAGCTCATCAACC
AAAATTAGCCACCGTTGTGAATTAAACCATCTACATATCTTCTATTTTCTTTTTCTTTTTTTTTTTTCTTTTCGCCTCTGGGTTTTGACAAAAAGAAATA
AAAATATTAATTAATTTATAGTTAATTATGATGGAGAGATTCTGGGGCCGAAGCTCAAAGATTTTCTGGCGGAGGGAGGTTGAGATCCAGATTGATGCCT
TTGCTGAGCGGCGATTTGGGCAGGTCGACGACGGCGGATGATGAGTCGGACTCGCTCTGCGCCGCACTGCCGCCATGGAATTCTGCGGGCACGCGTCGCA
GTTTGTTCATTAGCTCTATGATTTCTTGCCGCGACTCGGGCCGAAGGTGAAGCATCGTGTTCTGCATCGGCATGATCCTGACCAATCCACCGGCGGAGGA
TGCCGCGACGGCTGCGGCGGGGCGTTGGTTGTGGTTATTCTGGAAGGGAAATCTCATCCGCCGCCGGCCGAGAGTGAGGTCCAATAGTGTGGAATCCGGC
ACCGCCACCGCCACCGCCACCGGAGGAAATGTCTCCCGGCTGGAGGACTCCACCGAACTGCTCTGGCAGCCTCCTCCGCTGTGTCGAATGTCCCAAGCCA
AACGCGGCTCTTCTTGCCGGGATCCCTGATCTCGGCGGCGTACCTGCCCCAAGGCCTCTTCCTCACCCCACGAAAGTGCATTTCATTATCACCGCCAGCG
GAGGCCGCCGTCGTCCTGACCCTTGGCGCCATGACATGTACACAGTTGTACAGTTGGATGTTTGATTATTGGGAGGGGGGAAGAATTAAG