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Detailed information on CNT3061548


BLAST search results

BLAST vs Swiss-Prot:
sp|Q7XNX6|SUS7_ORYSJ, E-value = 3e-74

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30678571Arabidopsis lyrataSetaria viridis11.1123.5886.8191forward
CNT30377308Arabidopsis lyrataArabidopsis thaliana30.0455.2897.56246forward
CNT30500405Arabidopsis lyrataCoffea canephora30.0449.682.11246forward
CNT30559910Arabidopsis lyrataActinidia chinensis13.5550.9283.78111forward
CNT30250827Arabidopsis lyrataAvena sativa12.8230.2684.76105forward
CNT30610552Arabidopsis lyrataGossypium raimondii35.0444.785.02287forward
CNT30713351Arabidopsis lyrataMalus domestica golden35.0464.9382.58287forward
CNT30626879Arabidopsis lyrataDaucus carota34.1950.2779.29280forward
CNT30679535Arabidopsis lyrataTriticum urartu8.1825.8789.5567forward
CNT30478109Arabidopsis lyrataArabidopsis halleri30.1699.298.79247forward
CNT30361762Arabidopsis lyrataSorghum bicolor9.7724.3987.580forward
CNT30621781Arabidopsis lyrataCajanus cajan14.6540.9681.67120forward
CNT3023679Arabidopsis lyrataPopulus trichocarpa22.7133.0484.95186forward
CNT30116122Arabidopsis lyrataOryza nivara10.8733.2186.5289forward
CNT30333478Arabidopsis lyrataCynara cardunculus1625.4480.92131forward

Expression of CNT3061548

Peptides detected in this lncRNA

>peptide 1 (97 aa)
MRSYIFFISAFSSLSFDSFLLSPPTTTKLASSRRRVLFILNIAVEELLDLRVEFSQSTLLLCVREVDAHISTRGDNVKLGIKHIDPVNNSVQSGKSKG

>peptide 2 (38 aa)
GPQDGQGSRHASRIHTHQSMSGASVNRFAKCICKTQTR*

>peptide 3 (71 aa)
MWKPDLPCTMISAGPPLQVAKVGNPQVMASTTVNPKASYNAGCTNAPLVSQMYRYSSPFLTRFIWEEIHLN*

Sequence

>CNT3061548
CGGGCCTCAAGATGGTCAAGGTTCGAGACATGCTTCCAGAATCCATACACACCAGTCAATGTCAGGAGCCTCTGTGAATAGATTTGCCAAGTGTATCTGC
AAAACACAAACAAGATAAGTCAGCACCTAAACTTGAGAATATAGGCATGATGAGTTTTTTTTTTTACTTCTCCTCAATCCTCTGAAGCCCTCCTTTTGAG
ATCTCATCCCAGTGAGATGGATCCTCCTTACACTTGGTGAAGAAATCAGCAAGAGTATTAGCAGCCTGATCACCATGGTAAGGGTCAATGTGGAAACCCG
ATTTACCGTGCACAATGATCTCAGCTGGACCACCTTTGCAAGTGGCAAAAGTCGGTAATCCACAAGTCATGGCCTCCACAACAGTCAACCCAAAGGCTTC
ATACAATGCAGGTTGCACAAACGCACCCTTGGTGTCACAGATGTACCGGTACAGCTCACCGTTCCTAACCCGGTTCATCTGGGAGGAGATCCACCTGAAC
TGACCGTTCAGCTTGTATTCTTCAATGAGATCATACATTTTCTTCATCTCTGCTTTCTCTTCATTGTCCTTTGATTCTTTCCTCCTGTCTCCTCCCACAA
CAACCAAGTTAGCCAGCTCACGCAGGCGGGTGCTCTTCATTCTCAACATCGCTGTAGAGGAGCTCCTCGATCTCAGAGTGGAATTTAGTCAATCTACGCT
TCTCCTCTGTGTAAGGGAAGTAGATGCTCATATCAGCACCAGGGGAGACAATGTTAAACTTGGGATCAAACACATCGATCCCGTGAACAACTCGGTACAA
TCCGGGAAGAGTAAAGGCC