« Back to Arabidopsis lyrata search


Detailed information on CNT3061502


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH33|UBQ11_ARATH, E-value = 3e-98

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30540602Arabidopsis lyrataBrassica napus56.6137.7990.17407forward
CNT30235198Arabidopsis lyrataBrassica oleracea61.4740.2689.37442forward
CNT30312715Arabidopsis lyrataCamelina sativa59.1142.6793.41425forward
CNT3073617Arabidopsis lyrataBrassica juncea56.1911.9692.08404forward
CNT30262381Arabidopsis lyrataBrassica rapa60.7827.2891.76437forward

Expression of CNT3061502

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MRRCWSGGMPSLSWILAFTLSMVSELSTSRVMVLPVKECLPCP

>peptide 2 (52 aa)
MRRCWSGGIPSLSWILAFTLSMVSELSTSSVIVFPVRVFTKICMPPRSLSTK*

Sequence

>CNT3061502
CTGCTGCTGACATAATAGGAGAGGCAGAGATTGATATCCAACCATTAAAAACATCTGCTATTACAAGTTTTGCACGTTAATTTTCAGGCTTATTAAGCAA
ACGAAGCACATAGAAAAGACACTCGCAGGATAATCCAAGAGGTGAAGAAGTACAATACTTCAATTTGTCATTATAGAAAGAAAGGAGAGACAAAAGAACG
GAAACATACTTCATCAATTATTCATTACGGGCATTACAAGGTAAGAGGAGACAAGTTTTAAAAGCCACCACGGAGACGAAGGACCAAGTGAAGGGTCGAC
TCCTTCTGGATGTTGTAGTCGGCCAAAGTACGACCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGGATACCTTCCTTATCCT
GGATCTTGGCCTTCACGTTGTCAATGGTGTCAGAGCTCTCCACCTCCAGCGTGATAGTCTTCCCGGTCAGAGTCTTCACGAAAATCTGCATGCCACCACG
AAGCCTTAGCACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCAGCTAAGGTGCGGCCATCCTCAAGCTGTTTTCCAGCGAAGATGAGACGCTGC
TGGTCTGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTGTCAATGGTGTCTGAGCTCTCCACTTCAAGGGTGATGGTCTTACCGGTCAAAG
AATGCCTTCCTTGTCCTGG