« Back to Arabis alpina search


Detailed information on CNT30614377


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30533721Arabis alpinaEucalyptus grandis42.4715.7683.64110forward
CNT30698134Arabis alpinaQuercus lobata39.775.5383.5103forward
CNT30376279Arabis alpinaArabidopsis thaliana56.7624.6695.92147forward
CNT30730016Arabis alpinaCorchorus capsularis36.6814.3586.3295forward
CNT30629841Arabis alpinaVigna unguiculata33.214.783.7286forward
CNT30507461Arabis alpinaNicotiana attenuata45.9532.8780.67119forward
CNT3042792Arabis alpinaPrunus dulcis39.7727.9181.55103forward
CNT30635301Arabis alpinaCapsicum annuum45.9529.9784.87119forward
CNT3094038Arabis alpinaSolanum tuberosum27.4111.488.7371forward
CNT30560479Arabis alpinaActinidia chinensis43.2410.6485.71112forward
CNT3084834Arabis alpinaVigna radiata3926.2383.17101forward
CNT30238125Arabis alpinaBrassica oleracea34.757.6891.1190forward
CNT30172489Arabis alpinaTrifolium pratense39.387.9186.27102forward
CNT3075006Arabis alpinaBrassica juncea50.5829.1187.79131forward
CNT30261201Arabis alpinaBrassica rapa55.2116.187.41143forward
CNT30217087Arabis alpinaKalanchoe fedtschenkoi47.111.7482.79122forward
CNT30620323Arabis alpinaCajanus cajan395.6584.16101forward
CNT30360483Arabis alpinaLactuca sativa43.2425.5786.61112forward
CNT30570425Arabis alpinaVitis vinifera56.378.482.19146forward
CNT30644515Arabis alpinaCannabis sativa41.3118.5184.11107forward
CNT3027985Arabis alpinaTheobroma cacao40.5419.3488.57105forward
CNT30112090Arabis alpinaFicus carica42.475.3783.64110forward
CNT30725036Arabis alpinaLupinus angustifolius3915.6886.14101forward

Expression of CNT30614377

Peptides detected in this lncRNA

>peptide 1 (38 aa)
NPYDSRFLIKTRVKQNDTRELKVHSYIFHLHSFDVVRK*

Sequence

>CNT30614377
ACAATCCTTATGATTCAAGATTCTTGATCAAGACAAGAGTAAAACAGAATGATACAAGAGAGTTGAAGGTACATTCATATATATTTCATCTACATTCATT
TGACGTAGTAAGGAAGTAAGCCCAAGTCACCCCAGAGATTCCTCCAAAGAAGAATCCTCCAGTGAACTTAGCCCATCCATCAGCCGTCTGAAGCTGGTCA
GGCTGCTTCTTCCTCCCGGTCAATGTCAAACTCGGTGCGATCGATGGATCTCCTTCATT