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Detailed information on CNT30613891


BLAST search results

BLAST vs Swiss-Prot:
sp|Q71T45|H32_EUPES, E-value = 2e-41

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30521250Arabis alpinaSetaria italica22.8324.6686.9692forward
CNT30547549Arabis alpinaIpomoea triloba45.1623.5179.67182forward
CNT30698248Arabis alpinaQuercus lobata44.4224.5285.47179forward
CNT30267640Arabis alpinaChenopodium quinoa45.6625.3484.78184forward
CNT3069241Arabis alpinaQuercus suber44.4240.6885.47179forward
CNT30380641Arabis alpinaManihot esculenta28.7816.7984.48116forward
CNT30200358Arabis alpinaPisum sativum47.6430.8784.38192forward
CNT30709007Arabis alpinaGlycine max37.4763.4584.77151forward
CNT3048083Arabis alpinaPrunus dulcis33.7519.3784.56136forward
CNT3090157Arabis alpinaSolanum tuberosum22.0813.886.5289forward
CNT30177168Arabis alpinaSecale cereale25.3113.7383.33102forward
CNT30304662Arabis alpinaTriticum aestivum26.0520.3983.81105forward
CNT30219859Arabis alpinaHordeum vulgare24.5739.7683.8499forward
CNT30398097Arabis alpinaTriticum turgidum29.0315.2982.91117forward
CNT30565750Arabis alpinaActinidia chinensis43.6716.0181.82176forward
CNT30591253Arabis alpinaMusa acuminata22.8329.4982.6192forward
CNT3084857Arabis alpinaVigna radiata45.9115.0781.08185forward
CNT30508643Arabis alpinaSolanum lycopersicum22.0811.5784.2789forward
CNT30443283Arabis alpinaAegilops tauschii26.0517.184.76105forward
CNT30255091Arabis alpinaAvena sativa26.0516.385.71105forward
CNT30657055Arabis alpinaTriticum dicoccoides24.5718.9383.8499forward
CNT30309861Arabis alpinaCamelina sativa38.7125.1689.1156forward
CNT30259840Arabis alpinaBrassica rapa45.4163.3286.34183forward
CNT30457532Arabis alpinaSaccharum spontaneum11.1722.591.1145forward
CNT30141394Arabis alpinaLolium perenne29.0318.2582.05117forward
CNT306284Arabis alpinaZea mays17.8733.6487.572forward
CNT30609694Arabis alpinaGossypium raimondii33.7517.7585.29136forward
CNT30720053Arabis alpinaTriticum spelta24.5733.6783.8499forward
CNT30477972Arabis alpinaArabidopsis halleri48.3956.3688.72195forward
CNT30368649Arabis alpinaSorghum bicolor43.9242.1480.23177forward
CNT30622400Arabis alpinaCajanus cajan41.4418.2581.44167forward
CNT30358481Arabis alpinaLactuca sativa48.1421.1886.6194forward
CNT30414942Arabis alpinaPapaver somniferum45.4122.5188.52183forward
CNT30644610Arabis alpinaCannabis sativa46.1540.4387.1186forward
CNT3053477Arabis alpinaAmborella trichopoda44.9128.9181.77181forward
CNT30585391Arabis alpinaEchinochloa crusgalli25.3115.6784.31102forward
CNT3051266Arabis alpinaCucumis sativus44.4223.8787.71179forward

Expression of CNT30613891

Peptides detected in this lncRNA

>peptide 1 (45 aa)
LTNKSLERKLTDQKLGALLVLSDLTESDGSRTESVWLLHSSSRRS*

>peptide 2 (98 aa)
SRTSLWNGSLRIKSSVLFWYFLISRRATVPGRNLCGFFTPPVAGADFLAAFVASCFLGAFPPVDFLALGALLVLSDLTESDGSRTESVWLLHSSSCRS*

Sequence

>CNT30613891
CTCACGAACAAGTCTCTGGAACGGAAGCTTACGGATCAAAAGCTCGGTGCTCTTCTGGTACTTTCTGATCTCACGGAGAGCGACGGTTCCAGGACGGAAT
CTGTGTGGCTTCTTCACTCCTCCAGTCGCCGGAGCTGATTTCCTCGCTGCTTTCGTCGCGAGTTGCTTCCTTGGTGCTTTTCCTCCGGTGGATTTTCTTG
CGCTCGGTGCTCTTCTGGTACTTTCTGATCTCACGGAGAGCGACGGTTCCAGGACGGAATCTGTGTGGCTTCTTCACTCCTCCAGTTGCCGGAGCTGATT
TCCGAGCTGCTTTCGTCGCGAGTTGCTTCCTTGGTGCTTTTCCTCCGGTGGATTTTCTTGCGGTTTGCTTTGTACGAGCCATTGTAAAGAAATCGAAATC
AAG