Detailed information on CNT30613878


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30479061Arabis alpinaArabidopsis halleri6.8429.1487.588reverse complement

Expression of CNT30613878

Peptides detected in this lncRNA

>peptide 1 (87 aa)
MIAQDLSFSGILRFVNVLFFSRNFRSFDLWVEYLYICSSMLFFCQRASMLFVECFLGWTIYWRNFSSSLSPYCHQSDSFREQELNNE*

>peptide 2 (30 aa)
MVNRFHEILVYTMIMSIVWRLWCGTEDLQG*

>peptide 3 (34 aa)
MFPKRYLSSSFLYTESFKIPSLNLYMIDQVSCSI*

>peptide 4 (68 aa)
MFSFFLEIFVLLIFGWSISIYVRQCCFFVNEPLCCSLSVFWVGPYTGETLAALYHRIAIRAIPFESKS*

>peptide 5 (75 aa)
MFLRYMGFKFCEFLLRLLIPFCSLVFVSNSAASLLFWSKHQLSSSNIASAEKLDTSIYIVSSFEILIWLIDSMRS*

Sequence

>CNT30613878
TTACACATGACCTACGATCCTCTTTCAGTCCTTTTGTCTTCCACGCTTTACGTCGATAGCATTGATTAGGTCAAGTCAATATCTAACAACTAAGATGTTC
CCGAAGCGCTATCTCTCATCTTCGTTTTTGTATACCGAGTCATTCAAAATTCCTTCGTTGAACCTTTATATGATAGATCAAGTCAGTTGTTCAATCTGAG
GCAAACAATCTATGGCAACCATTCACTCAATCAAAACCCACATGAATCTCAAGTCAAAGCATCCTCTGATTTTCTAATTTTACAACCTAAATTTCAATCA
ATCGTTGTGCTTCGGTCAATATACATGATCGCTCAAGACTTATCTTTCTCGGGGATTTTGAGGTTCGTCAATGTTCTCTTTTTTTCTAGAAATTTTCGTT
CTTTTGATCTTTGGGTGGAGTATCTCTATATATGTTCGTCAATGTTGTTTTTTTGTCAACGAGCCTCTATGTTGTTCGTTGAGTGTTTTCTGGGTTGGAC
CATATACTGGAGAAACTTTAGCAGCTCTCTATCACCGTATTGCCATCAGAGCGATTCCTTTCGAGAGCAAGAGCTGAACAATGAATAAGATTCGGTGGTC
GAAATAGGGACTTTAGTGTCAAGTAATTCATTTGCTTATCTATTATATAGCTTTTGTTTTGCAATGTTCTTACGCTATATGGGTTTTAAATTTTGTGAAT
TTCTATTGAGATTGTTAATCCCCTTTTGTTCATTGGTTTTTGTCTCTAACTCTGCTGCTTCTTTGCTTTTTTGGTCAAAACATCAACTCTCTTCATCAAA
CATCGCAAGTGCTGAGAAACTTGACACAAGCATATACATTGTTTCTAGCTTTGAAATACTCATATGGTTAATCGATTCCATGAGATCTTAGTTTACACTA
TGATTATGTCTATTGTTTGGAGATTATGGTGTGGCACGGAAGATTTACAAGGATGAATTATTAGACATGGGGGTGGATTAACATCACACACTTTTCGTTG
CATTATTTAAGGACAAATGAATTTAGCTTGGTCTCTTATTAGTGAAAGAAGCTTCTTTAATTACATATTTGTACATACTACATAGCACCAGAGATGTACA
AGGACGAATATTTGATTGAAGGTTGATGCACTCCTTGAGTTTCGTTTTAAAATAGATACATTTTCTCTTTTAGTTTTGTATCTTTTGTGTCTTGTGATTT
TTTAATCTGTATACTTGTGTGTAATATCATAACCGAGTTTCTTTGTTAAGATTTCATATTTCATATAAACTAAATTTAGTGCAAGA