Detailed information on CNT30613842


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693832Arabis alpinaOryza sativa23.764.9183.17101reverse complement
CNT30373447Arabis alpinaArabidopsis thaliana24.4717.0890.38104reverse complement
CNT30553673Arabis alpinaOryza glaberrima23.7613.2483.17101reverse complement
CNT30596276Arabis alpinaOryza meridionalis23.7618.1383.17101reverse complement
CNT30594303Arabis alpinaEragrostis curvula23.7615.7683.17101reverse complement

Expression of CNT30613842

Peptides detected in this lncRNA

>peptide 1 (57 aa)
SQLLSQNFTEWISAAAVSPLSKASFAKPTGCITTKELDAFSWTKPNRSRASRHDQRS*

>peptide 2 (84 aa)
LNFSLKTSPNGSPQLLSLLLAKLPSRNPPVALPPRSLMRSLGQNPTEAELQDMINEVDTMVTVPLISQSSCYHSCSGCYWCYDW*

Sequence

>CNT30613842
TCTCAACTTCTCTCTCAAAACTTCACCGAATGGATCTCCGCAGCTGCTGTCTCTCCTCTTAGCAAAGCTTCCTTCGCGAAACCCACCGGTTGCATTACCA
CCAAGGAGCTTGATGCGTTCTCTTGGACAAAACCCAACCGAAGCAGAGCTTCAAGACATGATCAACGAAGTTGACACGATGGTAACGGTACCATTGATTT
CCCAGAGTTCTTGTTATCACTCTTGTTCCGGTTGTTACTGGTGTTATGATTGGTAGTGGGTTGCTAGGGGAAACTGAAGAGGAAGTGGGTGAGTTCACTG
ATGAAGGCATTTGATATTATGTGGATCAGCCACTGAACAAGCACACCTTTCATGAAAGAACTATATACACGTTGTAGATATTTGTTTTAAAAAAGCTTAT
AAATACGGTTGAATAAGTGAGGATA