Detailed information on CNT30613838


BLAST search results

BLAST vs Swiss-Prot:
sp|P22503|GUN_PHAVU, E-value = 2e-18

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30316599Arabis alpinaCorylus avellana33.9942.6185.12121forward
CNT30381644Arabis alpinaManihot esculenta39.0426.7382.73139forward
CNT30538870Arabis alpinaBrassica napus59.5547.8691.51212forward
CNT30609427Arabis alpinaGossypium raimondii33.4318.8683.19119forward
CNT30654253Arabis alpinaRosa chinensis36.825.7480.92131forward
CNT3031918Arabis alpinaTheobroma cacao2533.7185.3989forward

Expression of CNT30613838

Peptides detected in this lncRNA

>peptide 1 (58 aa)
MLVRTSNHGSFNRVWVWFLAVSPFPSSFAVILDFVLRNRSSSVMHASRVPWAKTHQITH

>peptide 2 (39 aa)
EILSKLIMVSLVFSTSNLLVSNPNPYLIHFWSSDIIPQV*

>peptide 3 (35 aa)
MAPSIVFGFGFLLSLHFHPPLQLYLTLFLGIEAPL*

Sequence

>CNT30613838
GAAATCCTTAGTAAGTTGATTATGGTTTCACTTGTGTTTAGCACATCTAATCTTCTGGTCTCAAACCCAAATCCTTACCTCATTCATTTTTGGAGCAGCG
ACATAATCCCACAGGTCTAGCTTTCTCAAGGTCTCCATGGTGCTGTTGTAGTTCATACGGACGTCGCGGAACCCATCATGCTTGTCAGGACCAGCAACCA
TGGCTCCTTCAATCGTGTTTGGGTTTGGTTTCTTGCTGTCTCTCCATTTCCATCCTCCTTTGCAGTTATACTTGACTTTGTTCTTAGGAATCGAAGCTCC
TCTGTGATGCACGCGTCTCGGGTACCGTGGGCCAAAACCCACCAGATAACTCATTT