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Detailed information on CNT30613340


BLAST search results

BLAST vs Swiss-Prot:
sp|P18960|RBS_SILLB, E-value = 1e-26

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30377165Arabis alpinaArabidopsis thaliana48.3542.9187.5336forward
CNT3075086Arabis alpinaBrassica juncea28.222.7190.82196forward

Expression of CNT30613340

Peptides detected in this lncRNA

>peptide 1 (56 aa)
MELSIGEAWGLVGDETDALDLTGVVESDDPNEGTRVLLLALLHFLQHLSGVGSQLP*

>peptide 2 (29 aa)
MEVMSVLVLRVTGKAADDFKPVNGATIVA*

Sequence

>CNT30613340
ACTACCTAACATCAAAAGATATGTTTAAGTAATCTTAATATGAAATCTAACTTTCTGGATATCTAAATATTAAGCATATAGTAGGTTACCATGATTCCCA
TGTTCTAATAACCTTTTTGTTTTTAAGTTACGATGATTCCCCTGTTCTAATAACCACCCGAAAAATAATGATAAAGATGAAGAAGAAGAAGTATAGAAAT
TACATATTCATAAATCAGACATTTGACAATCCGATAGAAAATGTCTCATAAACAGAAATCCAAGAAAGAAAGAAAAAAACAGACAATTGGGAACGAAAGA
GTAGAGATTATTATACGGATATTTTAGAAATGGAATTAAGCATCGGTGAAGCTTGGGGGCTTGTAGGCGATGAAACTGATGCACTGGACTTGACGGGTGT
TGTCGAATCCGATGATCCTAATGAAGGCACCAGGGTACTCCTTCTTGCACTCTTGCACTTCCTTCAACACTTGAGCGGAGTCGGTAGTCAACTTCCTTAG
CCAACTCAACGTCGGTAAGGTCAGGAAGTTAACTCTTCCGCCGTTGCTTGCGATGGAAGTGATGTCAGTGTTGGTCTTGCGGGTGACGGGGAAAGCAGCA
GATGACTTCAAGCCGGTGAATGGAGCGACCATTGTGGCTTGAGCCGGTGAGGCAACCACGGCAGCAGATGAGAGCATAGAGGCAGCCATTACTAC