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Detailed information on CNT30613329


BLAST search results

BLAST vs Swiss-Prot:
sp|P13951|RBS_SINAL, E-value = 2e-26

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30235395Arabis alpinaBrassica oleracea2965.0889.58192forward

Expression of CNT30613329

Peptides detected in this lncRNA

>peptide 1 (69 aa)
MELSIGEAWGLVGDETDALDLTGVVESDDPNEGTRVLLLALLHFLQHLSGVRKVRESLKLLLSDWWPHL*

>peptide 2 (35 aa)
MNSSDIYLHAVNSSAVACDGSDVSVGLAGDGESSR*

>peptide 3 (39 aa)
MQLTLPPLLAMEVMSVLVLRVTGKAADDFKPVNGATIVA*

>peptide 4 (31 aa)
TRKIMIKMKKKKYRNYIFINQTFDNPIENVS*

Sequence

>CNT30613329
ACCCGAAAAATAATGATAAAGATGAAGAAGAAGAAGTATAGAAATTACATATTCATAAATCAGACATTTGACAATCCGATAGAAAATGTCTCATAAACAG
AAATCCAAGAAAGAAAGAAAAAAACAGACAATTGGGAACGAAAGAGTAGAGATTATTATACGGATATTTTAGAAATGGAATTAAGCATCGGTGAAGCTTG
GGGGCTTGTAGGCGATGAAACTGATGCACTGGACTTGACGGGTGTTGTCGAATCCGATGATCCTAATGAAGGCACCAGGGTACTCCTTCTTGCACTCTTG
CACTTCCTTCAACACTTGAGCGGAGTCAGGAAGGTAAGAGAGAGTCTCAAACTTCTTCTTTCCGATTGGTGGCCACACCTATAAATCCCATTTCCAACAT
ATTAATTATTTAACCGATCTATCAAATGTACGATTGATGTAAAAAGATATGTAGACTGTAAGGAATGAACTCTAGTGACATCTACCTGCATGCAGTTAAC
TCTTCCGCCGTTGCTTGCGATGGAAGTGATGTCAGTGTTGGTCTTGCGGGTGACGGGGAAAGCAGCAGATGACTTCAAGCCGGTGAATGGAGCGACCATT
GTGGCTTGAGCCGGTGAGGCAACCACGGCAGCAGATGAGAGCATAGAGGCAGCCATTACTAC