CANTATAdb - search

Detailed information on CNT30613234

BLAST search results

BLAST vs Swiss-Prot:
sp|P10796|RBS1B_ARATH, E-value = 2e-70

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30535503	Arabis alpina	Eucalyptus grandis	39.82	26.3	82.38	227	forward
CNT30317063	Arabis alpina	Corylus avellana	31.93	31.49	80.22	182	forward
CNT30512567	Arabis alpina	Juglans regia	33.51	45.69	81.15	191	forward
CNT30377715	Arabis alpina	Arabidopsis thaliana	65.61	35.18	88.77	374	forward
CNT30616510	Arabis alpina	Sesamum indicum	33.33	13.77	82.11	190	forward
CNT30282594	Arabis alpina	Chenopodium quinoa	33.68	35.89	81.25	192	forward
CNT3020258	Arabis alpina	Citrullus lanatus	33.51	27.05	80.1	191	forward
CNT30727195	Arabis alpina	Corchorus capsularis	54.21	19.04	82.2	309	forward
CNT3069740	Arabis alpina	Quercus suber	32.98	20.75	80.32	188	forward
CNT30402284	Arabis alpina	Beta vulgaris	36.14	94.06	80.58	206	forward
CNT30712618	Arabis alpina	Glycine max	41.05	40.07	79.91	234	forward
CNT30166270	Arabis alpina	Pistacia vera	31.93	27.96	80.77	182	forward
CNT30543822	Arabis alpina	Brassica napus	46.32	91.03	89.77	264	forward
CNT30235546	Arabis alpina	Brassica oleracea	40.53	27.83	91.77	231	forward
CNT30146094	Arabis alpina	Medicago truncatula	33.86	37.92	82.9	193	forward
CNT30312471	Arabis alpina	Camelina sativa	66.14	50.33	88.86	377	forward
CNT3061892	Arabis alpina	Arabidopsis lyrata	59.47	42.53	91.45	339	forward
CNT3077965	Arabis alpina	Brassica juncea	56.84	38.71	92.28	324	forward
CNT30261239	Arabis alpina	Brassica rapa	40.53	29.24	92.21	231	forward
CNT30605276	Arabis alpina	Gossypium raimondii	31.4	45.32	84.92	179	forward
CNT30648517	Arabis alpina	Rosa chinensis	32.98	36.86	84.04	188	forward
CNT30623489	Arabis alpina	Daucus carota	34.04	29.26	80.41	194	forward
CNT30479552	Arabis alpina	Arabidopsis halleri	38.6	38.33	94.55	220	forward
CNT30620550	Arabis alpina	Cajanus cajan	22.98	10.93	82.44	131	forward
CNT30357026	Arabis alpina	Lactuca sativa	26.14	23.43	84.56	149	forward
CNT3038822	Arabis alpina	Cucumis melo	34.04	43.6	81.44	194	forward
CNT30335392	Arabis alpina	Cynara cardunculus	27.72	19.39	83.54	158	forward
CNT30725197	Arabis alpina	Lupinus angustifolius	31.93	25.78	81.87	182	forward
CNT30115242	Arabis alpina	Eutrema salsugineum	56.49	64.27	88.2	322	forward

Expression of CNT30613234

Peptides detected in this lncRNA

>peptide 1 (52 aa)
DSHVLITFLFLSYDDSPVLITTRKIMIKMKKKKYRNYIFINQTFDNPIENVS*

>peptide 2 (71 aa)
MELSIGEAWGLVGDETDALDLTGVVESDDPNEGTRVLLLALLHFLQHLSGVGASEQGKLPHCPVTSIVVSG*

Sequence

>CNT30613234
ATGATTCCCATGTTCTAATAACCTTTTTGTTTTTAAGTTACGATGATTCCCCTGTTCTAATAACCACCCGAAAAATAATGATAAAGATGAAGAAGAAGAA
GTATAGAAATTACATATTCATAAATCAGACATTTGACAATCCGATAGAAAATGTCTCATAAACAGAAATCCAAGAAAGAAAGAAAAAAACAGACAATTGG
GAACGAAAGAGTAGAGATTATTATACGGATATTTTAGAAATGGAATTAAGCATCGGTGAAGCTTGGGGGCTTGTAGGCGATGAAACTGATGCACTGGACT
TGACGGGTGTTGTCGAATCCGATGATCCTAATGAAGGCACCAGGGTACTCCTTCTTGCACTCTTGCACTTCCTTCAACACTTGAGCGGAGTCGGTGCATC
CGAACAAGGGAAGCTTCCACATTGTCCAGTAACGTCCATCGTAGTATCCGGGTGAGTTTCCGTGCTCACGGTAGTCAACTTCCTTAGCCAACTCAACGTC
GGTAAGGTCAGGAAGGTAAGAGAGAGTCTCAAACTTCTTCTTTCCGATTGGTGGCCACACCTATAAATCC