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Detailed information on CNT30613113


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH33|UBQ11_ARATH, E-value = 9e-160

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30636043Arabis alpinaCapsicum annuum74.9744.1184.62689forward
CNT30233220Arabis alpinaBrassica oleracea73.1286.7185.71672forward
CNT30311059Arabis alpinaCamelina sativa75.6355.0387.63695forward
CNT3074679Arabis alpinaBrassica juncea75.6376.886.62695forward
CNT30260853Arabis alpinaBrassica rapa75.6377.3986.33695forward
CNT30214147Arabis alpinaHelianthus annuus74.3284.9583.31683forward
CNT30477816Arabis alpinaArabidopsis halleri75.1985.5288.28691forward
CNT30643414Arabis alpinaCannabis sativa74.3264.9283.75683forward
CNT30120554Arabis alpinaCitrus clementina74.6571.3183.09686forward
CNT3036037Arabis alpinaCucumis melo63.44100.1784.56583forward
CNT30114931Arabis alpinaEutrema salsugineum75.5262.5885.73694forward

Expression of CNT30613113

Peptides detected in this lncRNA

>peptide 1 (52 aa)
MRRCWSGGIPSLSWILALTLSIVSELSTSRVMVLPVKVLTKICIPPRSLRTK*

Sequence

>CNT30613113
TAAGTAAATGCAAATGATGATAAAAGAGAAACAAAATAGATTCCAATAGGCAAATTCCATTATAGAGACATTCCAGGAAATAAGAACGAAAACATAGTTG
ATCAATTATTTTTCAGGGGCTTTACAAGGCCCCAAAACACAAACGATGGAAGTCTTAAAGAGAAACGAAATGTGAAACTTAAAAAACAGAAACATAGACT
TTTGATCAGTCACAGAACAAAGGTTTTTAGAAACCACCACGGAGACGGAGGACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCAGCCAAAGTGC
GACCATCCTCAAGCTGTTTACCAGCGAAGATTAGACGCTGCTGGTCCGGTGGGATACCTTCCTTGTCCTGGATCTTAGCCTTGACATTGTCAATTGTGTC
AGAGCTCTCGACTTCAAGGGTGATGGTCTTTCCAGTAAGAGTCTTCACGAAAATCTGCATACCACCACGAAGACGCAAGACCAAGTGAAGGGTCGACTCC
TTCTGAATGTTGTAGTCGGCTAAGGTCCGACCATCCTCAAGCTGCTTTCCAGCAAAAATGAGACGCTGCTGGTCCGGAGGGATCCCTTCTTTGTCCTGGA
TCTTGGCCTTGACGTTGTCAATAGTGTCTGAGCTCTCGACCTCGAGGGTAATGGTCTTACCAGTCAAGGTCTTAACGAAGATCTGCATACCACCACGAAG
CCTGAGAACCAAGTGAAGAGTCGACTCCTTCTGGATATTGTAATCCGCCAAGGTACGGCCATCTTCCAACTGCTTTCCAGCGAAGATCAATCTCTGCTGA
TCCGGAGGAATTCCCTCCTTATCTTGGATCTTAGCCTTAACGTTGTCGATCGTGTCAGAACTTTCCACCTCGAGGGTGATAGTCTTTCCGGTGAGAGTTT
TCACAAAGATCTGCATCTG