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Detailed information on CNT30612915


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH33|UBQ11_ARATH, E-value = 2e-159

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30376918Arabis alpinaArabidopsis thaliana68.5893.4386.23668forward
CNT30540600Arabis alpinaBrassica napus70.5340.2785.59687forward
CNT30235037Arabis alpinaBrassica oleracea72.1829.1185.63703forward
CNT30510145Arabis alpinaSolanum lycopersicum70.7448.3887.08689forward
CNT3061830Arabis alpinaArabidopsis lyrata70.9449.1884.8691forward
CNT3077383Arabis alpinaBrassica juncea70.1252.786.38683forward
CNT30262285Arabis alpinaBrassica rapa70.9472.286.25691forward
CNT30477817Arabis alpinaArabidopsis halleri66.0260.0989.27643forward
CNT30426314Arabis alpinaPapaver somniferum64.3750.284.69627forward
CNT3026462Arabis alpinaPopulus trichocarpa70.8476.1683.48690forward
CNT30330420Arabis alpinaDioscorea rotundata67.0438.5983.77653forward
CNT3050758Arabis alpinaCucumis sativus63.8674.7684.24622forward

Expression of CNT30612915

Peptides detected in this lncRNA

>peptide 1 (69 aa)
MESRLFLDIVVGQSTAIFQLLSSEDQSLLIRRNSLLILDLSLNVVDRVRTFHLEGDSLSGESFHKDLHL*

>peptide 2 (61 aa)
MRRCWSGGIPSLSWILALTLSIVSELSTSRVMVLPVKVLTKICIPPRRRNTKWRVDSFWIL*

Sequence

>CNT30612915
GTGACAAACATAGACGATATAAGTAAATGCAAATGATGATAAAAGAGAAACAAAATAGATTCCAATAGGCAAATTCCATTATAGAGACATTCCAGGAAAT
AAGAACGAAAACATAGTTGATCAATTATTTTTCAGGGGCTTTACAAGGCCCCAAAACACAAACGATGGAAGTCTTAAAGAGAAACGAAATGTGAAACTTA
AAAAACAGAAACATAGACTTTTGATCAGTCACAGAACAAAGGTTTTTAGAAACCACCACGGAGACGGAGGACCAAGTGGAGAGTAGACTCCTTCTGGATG
TTGTAGTCAGCCAAAGTGCGACCATCCTCAAGCTGTTTACCAGCGAAGATTAGACGCTGCTGGTCCGGTGGGATACCTTCCTTGTCCTGGATCTTAGCCT
TGACATTGTCAATTGTGTCAGAGCTCTCGACTTCAAGGGTGATGGTCTTTCCAGTAAGAGTCTTCACGAAAATCTGCATACCACCACGAAGACGCAAGAC
CAAGTGAAGGGTCGACTCCTTCTGAATGTTGTAGTCGGCTAAGGTCCGACCATCCTCAAGCTGCTTTCCAGCAAAAATGAGACGCTGCTGGTCCGGAGGG
ATCCCTTCTTTGTCCTGGATCTTGGCCTTGACGTTGTCAATAGTGTCTGAGCTCTCGACCTCGAGGGTAATGGTCTTACCAGTCAAGGTCTTGACGAAGA
TCTGCATACCACCACGTAGACGCAACACCAAATGGAGAGTAGACTCTTTCTGGATATTGTAGTCGGCCAGAGTACGGCCATCTTCCAACTGCTTTCCAGC
GAAGATCAATCTCTGCTGATCCGGAGGAATTCCCTCCTTATCTTGGATCTTAGCCTTAACGTTGTCGATCGTGTCAGAACTTTCCACCTCGAGGGTGATA
GTCTTTCCGGTGAGAGTTTTCACAAAGATCTGCATCTGTAATTCACCAAAAACCAAAGATCAATAACCTAATCC