Detailed information on CNT30612587


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30546130Arabis alpinaIpomoea triloba18.0131.8687.6965forward
CNT30375125Arabis alpinaArabidopsis thaliana21.3316.8994.8177forward
CNT30405492Arabis alpinaBeta vulgaris18.0127.3187.6965forward
CNT30629770Arabis alpinaVigna unguiculata15.5123.3392.8656forward
CNT30236705Arabis alpinaBrassica oleracea38.2329.382.61138forward
CNT30311330Arabis alpinaCamelina sativa15.5121.2191.0756forward
CNT3076072Arabis alpinaBrassica juncea21.6111.4487.1878forward
CNT30263158Arabis alpinaBrassica rapa21.6130.8387.1878forward

Expression of CNT30612587

Peptides detected in this lncRNA

>peptide 1 (42 aa)
NLSFITQSFDTHIAHRIYYYFFYIQLKGITMSPMFLCHGSAK*

>peptide 2 (66 aa)
MVQSRAILIRPKLPALGNEAPEEANLDLEEDRSEGYTAAIPQLIKELVAIVSLLSDLSLSTTEMKM*

Sequence

>CNT30612587
CAATCTGTCTTTCATTACACAGAGTTTTGATACACATATAGCTCATAGGATATATTACTACTTTTTTTACATTCAGTTGAAAGGGATAACAATGTCGCCA
ATGTTCTTGTGCCATGGATCAGCCAAGTGAGTAGCCAAGTTCTCCAATGGTCCAGTCCCGGGCCATTCTGATACGGCCAAAGTTACCGGCACTAGGTAAC
GAAGCTCCGGAGGAAGCAAATTTAGACTTGGAAGAAGACAGAAGCGAAGGGTACACGGCGGCGATACCGCAGCTCATCAAGGAGTTAGTCGCCATTGTTT
CTCTTCTCTCTGATCTGTCTCTCTCTACCACAGAGATGAAGATGTGAACGAGAGGTGTTTG