Detailed information on CNT30612558


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675638Arabis alpinaSetaria viridis80.6461.5484.87304forward
CNT30376640Arabis alpinaArabidopsis thaliana99.246.4692.78374forward
CNT30619260Arabis alpinaSesamum indicum99.235.1281.82374forward
CNT3020603Arabis alpinaCitrullus lanatus56.2313.788.21212forward
CNT3072357Arabis alpinaQuercus suber84.8831.1686.88320forward
CNT30380227Arabis alpinaManihot esculenta41.3837.4187.82156forward
CNT30402445Arabis alpinaBeta vulgaris36.631.0887.68138forward
CNT30200315Arabis alpinaPisum sativum48.8135.6684.24184forward
CNT30709695Arabis alpinaGlycine max62.3370.3686.38235forward
CNT30261371Arabis alpinaBrassica rapa84.8876.5688.12320forward
CNT30231757Arabis alpinaAnanas comosus24.9335.7485.1194forward
CNT30365203Arabis alpinaSorghum bicolor14.0624.6588.6853forward
CNT30355186Arabis alpinaLactuca sativa43.522.2884.15164forward
CNT30705212Arabis alpinaPrunus avium36.3437.2388.32137forward
CNT3021984Arabis alpinaPopulus trichocarpa84.8814.9685320forward
CNT30329805Arabis alpinaDioscorea rotundata29.7119.0891.07112forward
CNT30103876Arabis alpinaOryza rufipogon80.967.3384.59305forward
CNT30117878Arabis alpinaOryza nivara81.768.4484.74308forward
CNT30723539Arabis alpinaLupinus angustifolius93.127.5782.62351forward

Expression of CNT30612558

Peptides detected in this lncRNA

>peptide 1 (37 aa)
EHPPISLWLDGDTLHTRGKSRVQACQSHCQNDQCCTQ*

>peptide 2 (41 aa)
MLHTIALFFIFLIWSTMMISLLPVVVTKMSASDTTSSRVRT*

>peptide 3 (64 aa)
NTHLSVCGLMVIRFTPGVSLESKHVNLIVKMTNVAHNSIVLHLPHMVNHDDIFVTSSGNKDVSF*

Sequence

>CNT30612558
GGAACACCCACCTATCAGTCTGTGGCTTGATGGTGATACGCTTCACACCAGGGGTAAGTCTCGAGTCCAAGCATGTCAATCTCATTGTCAAAATGACCAA
TGTTGCACACAATAGCATTGTTCTTCATCTTCCTCATATGGTCAACCATGATGATATCTTTGTTACCAGTAGTGGTAACAAAGATGTCAGCTTCTGATAC
AACATCCTCAAGAGTAAGAACCTGAAGACCTTCCATAAGTGCCTGAAGAGCACAGATGGGATCAATCTCAGTCACGATAACTCTAGCACCAGCAGTCTTC
ATGGCAGCAGCACAACCCTTTCCAACATCTCCGTAACCACAGATAACAGCAACCTTTCCAGCAATCATAACATCAGT