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Detailed information on CNT30612508


BLAST search results

BLAST vs Swiss-Prot:
sp|P35450|EFGC_PEA, E-value = 6e-14

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675350Arabis alpinaSetaria viridis5.9973.0883.55152forward
CNT30640134Arabis alpinaNymphaea colorata13.9151.3182.44353forward
CNT30532226Arabis alpinaEucalyptus grandis13.4847.382.16342forward
CNT30316236Arabis alpinaCorylus avellana9.2651.284.68235forward
CNT30547410Arabis alpinaIpomoea triloba8.2339.3684.21209forward
CNT30371838Arabis alpinaArabidopsis thaliana46.389.0889.621175forward
CNT30276060Arabis alpinaChenopodium quinoa13.7154.8984.2348forward
CNT3019597Arabis alpinaCitrullus lanatus15.9654.1479.01405forward
CNT3071371Arabis alpinaQuercus suber11.3110083.62287forward
CNT30379936Arabis alpinaManihot esculenta7.2555.0984.24184forward
CNT30488117Arabis alpinaOlea europaea4.3322.5487.27110forward
CNT30711584Arabis alpinaGlycine max10.1736.6582.56258forward
CNT3045373Arabis alpinaPrunus dulcis17.9358.0482.86455forward
CNT30636551Arabis alpinaCapsicum annuum11.7845.385.28299forward
CNT30191206Arabis alpinaSecale cereale20.5342.5780.42521forward
CNT30300473Arabis alpinaTriticum aestivum19.5851.3480.68497forward
CNT30391299Arabis alpinaTriticum turgidum15.9673.6480.74405forward
CNT30561656Arabis alpinaActinidia chinensis19.6635.6481.16499forward
CNT3085191Arabis alpinaVigna radiata6.3822.5983.33162forward
CNT30543621Arabis alpinaBrassica napus5.9558.9889.4151forward
CNT30552635Arabis alpinaOryza glaberrima10.2425.0586.15260forward
CNT30143750Arabis alpinaMedicago truncatula16.2753.9284.02413forward
CNT30441049Arabis alpinaAegilops tauschii13.9193.3984.14353forward
CNT3059659Arabis alpinaArabidopsis lyrata8.555090.32217forward
CNT30263415Arabis alpinaBrassica rapa29.3910091.02746forward
CNT301916Arabis alpinaZea mays15.4596.3184.18392forward
CNT30605685Arabis alpinaGossypium raimondii14.3847.7782.74365forward
CNT30212259Arabis alpinaHelianthus annuus25.0295.280.79635forward
CNT30684236Arabis alpinaTriticum urartu14.8545.8681.43377forward
CNT30345702Arabis alpinaEragrostis tef16.7852.7280.28426forward
CNT30361348Arabis alpinaSorghum bicolor18.5289.3584.89470forward
CNT30596122Arabis alpinaOryza meridionalis23.485.8481.31594forward
CNT30359537Arabis alpinaLactuca sativa12.3347.580.19313forward
CNT30369654Arabis alpinaOryza glumipatula10.2429.5585.77260forward
CNT30153558Arabis alpinaPrunus persica8.0860.6580.49205forward
CNT30706279Arabis alpinaPrunus avium23.4898.1983.72596forward
CNT3054398Arabis alpinaAmborella trichopoda8.2330.4784.21209forward
CNT30107537Arabis alpinaOryza longistaminata10.2428.2985260forward
CNT30119815Arabis alpinaCitrus clementina12.4969.0683.28317forward
CNT30332479Arabis alpinaDioscorea rotundata4.2237.8184.11107forward
CNT30100260Arabis alpinaOryza rufipogon16.5558.582.14420forward
CNT30575129Arabis alpinaOryza barthii10.2431.9486.15260forward
CNT30497701Arabis alpinaDigitaria exilis8.9469.8583.7227forward
CNT30116094Arabis alpinaOryza nivara10.2429.5586.15260forward
CNT30604019Arabis alpinaOryza punctata10.1376.0482.88257forward
CNT30557952Arabis alpinaPanicum hallii16.2750.6785.47413forward
CNT3051057Arabis alpinaCucumis sativus2.5628.3887.6965forward

Expression of CNT30612508

Peptides detected in this lncRNA

>peptide 1 (45 aa)
MEPRVRENKEFVLVVMKSLQLVFELGQWSHLFLQTLPLPDISNQH*

>peptide 2 (43 aa)
MYKRLCLLGDLLITVRIDRSRTVSRNETTGSDLMISAPPMKSS*

>peptide 3 (35 aa)
MCSPDSSIVHTTIGSDLANLLSPSTSLGRSEATLH*

Sequence

>CNT30612508
CAAAAACAGTGATAATAAAAGTTCTCAACTAAAAGTAAAACATTCAGAGGGGATGGCCAAAGATAAAGTCATCAATCCATCATAGTACCAAAACAGTAAA
CTTAAAACAAAAGACTGACAAAAATAAGGTAGTAGCGAGAGAGAGTAATATCCAGCAAAATGGAACCAAGAGTAAGAGAGAACAAAGAGTTTGTCTTGGT
GGTGATGAAGAGCTTACAGCTTGTCTTCGAACTCGGACAATGGAGTCATCTGTTCCTTCAAACCCTTCCTCTTCCTGATATCAGCAACCAACACTGAAGC
TTGAGTACCTGGCTCCAGAGGGTCGGATCCCATCATCTCCCAGTGATCAAACACACACTGTGGGAAGGCCTGTCCAGATGTTGCAGCCCTAAGCTGACTT
GAGAAACCAAAAGACTCCACGACTGGCAAGTATGCCTTGATGTTGTACAAGGGTGTTCCTTGCCTCTGCATCTCCTCAAAGACGTGACCACGCTTCTGAT
TCAGCACACTGTAAATACCTCCAAGAGCTCCCTCTGGTGCTTGGATCTCAACCATGTAAATAGGCTCCATAAGTCTGGGCTTGGCAGTGATCTGGGAAGC
GTAGATGACCCTTCTAGCAGTGGGAATAACTTGACCACCACCTCTGTGGATAGCATCAGAATGGAGAACCACATCGCACACCTCGAAACAGATACCTCTC
ATGTTCTCTTCTCCTAGAGGACCTTCCTTGGACGCCCACTGGAAACCAGCAACAACTGAATCCTTGATTTCATTAAGGTACTGAACTCCCTTACACATGT
CAACCACCATGTTAGGTCCGGTGGTTTCAGGTCCTTGTCCCATCCAAATTCCTCAGCCAAGATCTTGGATCTGATTTTGGGGTCATCTCTTGGGCCAATA
CGTCCATCATCAATTGCCTCAGCAAGACCTTCCTCCATTGGTCTGGCCTCCATGTACAAACGGTTATGCTTGTTGGGGGACTTGCTCATCACAGTGCGGA
TAGATCGCTCAAGGACAGTCTCACGGAATGAGACAACAGGGTCAGACTTGATGATCTCAGCACCACCCATGAAATCATCCTGAAGATCCTTCAAACAGAT
CTCAAGATGTAATTCTCCAGCACCAGCAACAATGTGTTCACCTGATTCTTCCATTGTGCACACAACCATAGGGTCAGACTTGGCCAACCTCTTGAGTCCC
TCAACCAGCTTGGGAAGGTCAGAAGCAACCTTGCACTGAACAGCAACACGCACAACAGGGGACACAGAGAACTTCATGGCACGAATAGGGTGGGCATCAA
CTTCTTTCTCGTTAGTCAGAGTTGCGTTTTTGGTGATGTACTGATCCAGACCAACCATAGCGACAGTGTTACCACAGGGAACATCTTCAACAGTCTCCTG
CCTCTTTCCCATCCAGATGACGGTTCTCTGGACACTCTTGACATACAGATCCTTCTTCTCACCAGGGACAAAGCTGGAATCATCTTGGAAACGTAAAGCA
TGAGAGGACCATTAGGATCACAGTTCCTGATGGCATTGGCATACTGATCATCGAGGGGACCTTCATACAGATTCTCAACACGGTACCTCTGAGCAGTGTG
GGGAGATGGAAGGTGAAAGATCATCATCTCAAGTAGTGCGGTACTTGCAGGCAACCAGGTCTGCATGACACGCTTCATCAAAGGTTTACCCATCAGCTCC
TTCTCATCATTCTTCATCTGAACACCTAGCTTAGCAAGCATAGGCCACAACTTGTCTTTCTGGTCATTCATGCAAGTGGCAATGATCTGCTTGATTGGCT
CATAACAGAACTGAACAAACCCACGCTTGCAGGTCGCGGTACCAGTGTTCTTGCTGCTCCATTTCCTGGTAGCAGGGTCAAAGAAGTTCTCACCCCAAAG
CCTCTCCATCATCTTAGTTTCGTCAACACCGAACTTGGAAGCGTACATCTTAGCAAAGTTGGTCAGGGTGAAGGCCCATCCGTGAAGACCAGCAGAGAAA
GCCACAGTTCCCTTCTCTGGGTAGACCTGAACATCCCCAAGAAGAGGATCCTCGTAAGTGGCCATGATGACGTTAGCGTTCTCAATGACCCTCTGGAAAG
TCTGGTAAGCCTCCTCACCATCAACCTGAAGCTCAAGGAAACACCTGTCCATCTTGTTAACAGTCAAGACTGGCCTAATCCTCTCACCAAGGGCCTGACG
CAACACTGTCTCGGTCTGGACACAGACACCCTCAATACAATCCACCACCACAAGAGCACCATCAGTAATACGGAGAGCAGCAGTAACCTCAGAAGAAAAG
TCAACGTGCCCAGGGGAATCAATCAGATTGATAAGGTATTCGTTACCGTCCCTAGCACCAGTGAAACTCTTCAAGGACTCATCAGTCATCTCATAATAGA
GAGAAATACCGGTTGACTTAATTGTAATACCACGTTCTGCTTCATCAGCACGAGTATCAGTCATACGCACATCACCAGCAACCTCTTGTGCAATGATACC
AGCAGCAGCAACCAAAGAGTCAGTAAGAGTTGATTTCC