Detailed information on CNT30612419


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30201416Arabis alpinaPisum sativum30.1921.485.9464forward
CNT3047739Arabis alpinaPrunus dulcis30.667.3386.1565forward
CNT3085543Arabis alpinaVigna radiata30.1912.1485.9464reverse complement
CNT30539514Arabis alpinaBrassica napus64.155.884.56136forward
CNT30143656Arabis alpinaMedicago truncatula26.425.0689.2956forward
CNT3080286Arabis alpinaBrassica juncea64.1541.4686.03136forward
CNT30264067Arabis alpinaBrassica rapa64.1516.6585.29136forward
CNT30349956Arabis alpinaEragrostis tef30.6625.187.6965reverse complement
CNT30574856Arabis alpinaOryza barthii29.2513.6988.7162reverse complement

Expression of CNT30612419

Peptides detected in this lncRNA

>peptide 1 (39 aa)
AVGALVREARNACLLTLQSPRDLSPSFGLTRPVLEMTSQ*

>peptide 2 (57 aa)
MFTDPAITTRSFPEFWPHSPGTGNDFPVGHPSLDCSSSSTLNFGVLSRQVTEKISAFW

Sequence

>CNT30612419
GGCGGTCGGTGCGTTAGTCCGGGAGGCTAGAAATGCATGTTTACTGACCCTGCAATCACCACGCGATCTTTCCCCGAGTTTTGGCCTCACTCGCCCGGTA
CTGGAAATGACTTCCCAGTAGGTCACCCATCCCTCGATTGCTCCAGCTCAAGCACGCTTAACTTTGGAGTTCTCTCAAGACAAGTGACCGAAAAGATAAG
TGCATTTTGGTG