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Detailed information on CNT30612366


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LK36|SAHH2_ARATH, E-value = 2e-54

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671362Arabis alpinaSetaria viridis20.6616.6787.556forward
CNT30639580Arabis alpinaNymphaea colorata32.8419.683.1589forward
CNT30543653Arabis alpinaBrassica napus93.7336.8193.7254forward
CNT3076639Arabis alpinaBrassica juncea93.7339.7592.91254forward
CNT30139718Arabis alpinaLolium perenne23.2516.6785.7163forward
CNT30651401Arabis alpinaRosa chinensis57.5658.2183.97156forward
CNT30680065Arabis alpinaTriticum urartu62.7344.8580.59170forward
CNT30573685Arabis alpinaVitis vinifera57.564083.33156forward
CNT3026673Arabis alpinaPopulus trichocarpa91.5126.2483.06248forward
CNT30103811Arabis alpinaOryza rufipogon35.0618.5583.1695forward
CNT30578287Arabis alpinaOryza barthii51.2926.3881.29139forward

Expression of CNT30612366

Peptides detected in this lncRNA

>peptide 1 (45 aa)
MLRQNVHLLLVLTARFLVPKLKLSNHLVSERARHDETRVPSSTTQV

Sequence

>CNT30612366
TTCTCATCCAAATGCTTAGGCTTGTATGGTCCTTCAATGGGAATGCTGATGTAGTCAGATTGGTCCTTTGAAAGCTTGGTGAGTCTAGCTCCAAGCTTAC
CCAAGTGAAGTGCTGCAACCTTCTCATCCAAATGCTTAGGCAAAACGTACACCTTCTTCTCGTACTTACCGCTCGATTTCTCGTTCCAAAGCTCAAGCTG
AGCAATCACCTGGTTAGTGAAAGAGCAAGACATGACGAAACTCGGGTGCCCAGTAGCACAACCCAAGTTCA