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Detailed information on CNT30611888


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30549577Arabis alpinaIpomoea triloba16.822.9192.6882reverse complement
CNT30191267Arabis alpinaSecale cereale16.1923.2492.4179forward
CNT30538256Arabis alpinaBrassica napus21.1124.9498.06103forward
CNT30236394Arabis alpinaBrassica oleracea19.8826.2296.9197forward
CNT30313077Arabis alpinaCamelina sativa45.949.6785.27224forward
CNT3060259Arabis alpinaArabidopsis lyrata45.726.6788.79223forward
CNT3074464Arabis alpinaBrassica juncea21.1124.8898.06103forward
CNT30260341Arabis alpinaBrassica rapa21.1125.8898.06103forward
CNT30478095Arabis alpinaArabidopsis halleri43.6550.2487.79213forward
CNT30620847Arabis alpinaCajanus cajan15.9821.7991.0378forward
CNT30115210Arabis alpinaEutrema salsugineum18.4436.5997.7890forward

Expression of CNT30611888

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MTMERSSWFSQFCFIFYNLAYYSWLVMIVS*

Sequence

>CNT30611888
ATTAGAAGAGGCCCATAATACCAAATTTTTAGGGTTTTATTGTCGTATAAAACAGCAATATGAGCACATCTTGTAAAATCTCTTTCACATCTCCGCCGCT
TCTTTCTTGAGACGTAGACAGAATCTGAGGAGGGAAAGAGTATATCTTACTGCGAAACAAGCATGAGGGCTAAGTGGAAGAAGAAGCGTATGAGGAGGTT
GAAGAGGAAGAGACGAAAGATGAGACAGCGATCTAAGTAGATTTCGGAACCTGTTTTTGTCTTTGATCTTTTTTATAGACCAACTCTTGTGGGAGTTTTG
TTGGTTTTGCAATTTGCATTTGAATGTTTTGATGAACCAAATCGGAGCTATGTTTTCTATTAGTATTATGTTATGACAATGGAAAGATCTTCATGGTTTT
CTCAATTTTGCTTTATTTTCTATAATCTGGCTTATTATTCTTGGTTAGTGATGATCGTAAGTTAGTGTCTGCGTAGGGATCATTCGTT