Detailed information on CNT30611475


BLAST search results

BLAST vs Swiss-Prot:
sp|F4HQ17|LRL14_ARATH, E-value = 1e-177

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30479242Arabis alpinaArabidopsis halleri8.3659.5389.54153forward

Expression of CNT30611475

Peptides detected in this lncRNA

>peptide 1 (49 aa)
MNSPPYLNCSSTYQSPARSAEEHHASITQRHLRRFPRYPQHPVTRRCSP*

>peptide 2 (54 aa)
MFPLIPLKISTISSIDGLTSLSCCRHRNASSAIDIIFLLTSGSLSNPRLRSTSS*

>peptide 3 (57 aa)
MKRVSTCYCSSRDACSYGMAQKKEVSSNWKHIFQFNINKNKLETRIICRYSNQKVGV*

>peptide 4 (55 aa)
MRQNKPTMPIRMATPNTEPTTMPRDENKKNIFHTKKMVLRMVGVYMVIKSGGERT*

>peptide 5 (76 aa)
MRGGMIMLVRFRLQCLDGLTSKEDEILHDRREDVPPEFRLKCTHKQAKALCYVLMCIHRVSQDLDVSTISRFRSRF*

>peptide 6 (59 aa)
MSGDVYCFFGGNEFSEYHSEAVNVTLLVETVTLIILWIDVSWSALWCGGNVSLIRWKQS*

Sequence

>CNT30611475
TGCCATTTTAATTCGCAGCCACATAAAGATGATAGAGTTATTAAGTGACGCAACATGAAACTAATAGGTTCAATGGAGCCCCCAAAAAAACAAAATTAGA
AACACCGACTGTATATACCACCGCCAAACCCTAAAATATAACCTCTCAAAATGAACTCGCCACCGTATCTGAACTGCTCGTCCACTTATCAGTCTCCGGC
GAGATCGGCGGAGGAACACCATGCCTCAATAACCCAACGTCATCTCCGCCGCTTCCCTCGATATCCACAACATCCGGTGACTCGCCGATGTTCCCCTTAA
TCCCTCTCAAAATCTCCACGATTTCGTCCATCGATGGCCTAACTTCCCTCTCCTGTTGCAGACATCGGAACGCAAGCTCAGCCATCGACATCATCTTCCT
CCTCACTTCCGGATCCTTATCGAATCCCAGACTCAGATCCACGAGCTCGTGAAGCGCGTTGTTCTGGATTTTGGTTACGGCCATGTTTGCGAGGTTGATA
TCGTGACGATGTCTGGTGATGTCTACTGCTTCTTTGGAGGAAATGAGTTCAGTGAGTACCACTCCGAAGCTGTAAACGTCACTCTTCTCGTTGAGACGGT
AACATTGATAATACTCTGGATCGACGTATCCTGGAGTGCCTTGTGGTGCGGTGGAAATGTGAGTTTGATCCGTTGGAAACAATCGTGAGAGACCGAAATC
AGCTACTTTCACTGTGTGTTTCTCGTCTAGTAGAATGTTTGTAGTCTTAACGTCTCTATGAATGATCTCTGCAATATATGGAAATCCAATCAACAAAATT
CCCCAAATTGATGTTTAGTTTTCTTGTTTTTTTGTTTACCTGATGCGTGGAGGTATGATAATGCTTGTGCGGTTTCGATTGCAATGTTTAGACGGACTGA
CCAGCAAAGAGGACGAGATTCTGCACGATCGCCGTGAAGATGTTCCGCCAGAGTTCCGTTTGAAATGTACTCATAAACAAGCAAAAGCTCTCTGCTATGT
CTTGATGTGCATCCATAGAGTATCACAAGATTTGGATGTTTCAACGATTTCAAGATTTCGATCTCGTTTTTGAACTGTTCTACGCGTTTTAGCGATCTTT
CGTATAGTCGTTTCACTGCTACAGCTCGCCCATCCTTCAACATGCCTTAAGGATAGCCAAAGAGTCTTGAATCAATACTCACAAAGCTTTCAAGGAGATT
GATAAAATTCAGTGGTTCTTACCGTAGTAGACGGTACCAAAGCCTCCATCTCCAAGCTCTCTAGAGAAATTCTCAGTGGCTTCCTCGAGTTCTTCGTAGC
TGAACACTTGAACTCCGAAGTAGACACTTCCGTTTGCGAGGCTAGTGATTGAGGGAAGAAGAGAGTGATTGCTGCTTGAGGAAATTGTTGTGGAAGTTGG
ATTTCTTGATGTTTCCCTACTCGAATAAGACGATATTGGCAAGTCTTTGCTTGTGTATTGAGCTGCCTGCATTTTCTTTCTCCGGCTGATGAGACAGAAC
AAACCTACAATGCCCATAAGAATGGCCACCCCCAATACAGAACCAACCACAATGCCTAGAGACGAAAACAAAAAGAACATTTTTCATACTAAGAAAATGG
TATTGCGTATGGTTGGTGTATATATGGTAATTAAATCCGGTGGCGAAAGAACATGAAAAGGGTGAGCACCTGCTATTGCTCGTCCAGAGATGCCTGCAGC
TATGGAATGGCACAAAAAAAAGAGGTCAGTTCGAACTGGAAACATATCTTTCAGTTTAATATAAACAAGAACAAACTTGAAACTCGAATTATATGTAGAT
ATTCAAATCAAAAGGTGGGTGTGTAGGGAGA