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Detailed information on CNT30611125


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SHE8|PSAF_ARATH, E-value = 2e-45

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3091814Arabis alpinaSolanum tuberosum15.420.2182.09134forward
CNT30540068Arabis alpinaBrassica napus20.824.6386.19181forward
CNT30312957Arabis alpinaCamelina sativa23.9187.0382.69208forward
CNT30264705Arabis alpinaBrassica rapa20.821.5786.19181forward
CNT30480106Arabis alpinaArabidopsis halleri17.8269.5181.29155forward

Expression of CNT30611125

Peptides detected in this lncRNA

>peptide 1 (29 aa)
IEKFYIRNKNSTDFSTFLRLINFKSIHRF*

>peptide 2 (31 aa)
MFMAKLVSETHQVYEHGFQIDSKFVQISESI*

>peptide 3 (31 aa)
HRKILYQKQKLHRFFHISKAHQFQINPQVLR*

Sequence

>CNT30611125
ACATCGAAAAATTCTATATCAGAAACAAAAACTCCACAGATTTTTCCACATTTCTAAGGCTCATCAATTTCAAATCAATCCACAGGTTTTGAGATAAATT
TAGTGAAATTAGTATCAGAAAGCTCTTCATTTTTTTATTTTTTTTAATTACCAGGAGGTTCAAGACCGAATCCCGTAATCCAGAGGCCCCGAAATCACAA
CATGTAATATCATATTCAAATCAATCCACAATTTCAAGATGTTTATGGCAAAATTGGTATCAGAAACTCATCAAGTTTACGAACACGGATTTCAAATCGA
TTCAAAATTTGTTCAAATCAGCGAATCAATTTAACACTACCGCATCAGAAACCATATAGATCTGGAAGAAAACTAGTTAGAACCCTAAAATCAAAGAATC
CAAAACAGAGAAAATCGAAATCGATCTCTAGATCTAAACGATTCTCAAATTCTGAGCTATACGCGTGTACAGAATCAATCGAAGACGAACCTGCGTTTGG
TTTTCTCGATCTGAGCATTAAGAGCAAGAGCAGGAGCACTTTCAGGAGCATAAAGCTTAAGAGAAGATTCAAGTTTCTTAATCTGTTGCTTCTCTCTTTT
AGCGAACTGTTTCGATTCCTTACAAGGAGTCAAACCTGAGATATCAGCTACGGCTGGCATCGGAGCTGAGAGAAGGATCGAGGAAAGCGCAACCGCGGCG
GAGAAAGCTTTCATGGATTGTGGTACGGATTGAGAGAGAGATTTGTTAGATCTCGGGTTTAGAACCAGATTCGTTGGAATCGTGAGCGACATGACTCTCT
CTGGATTTGGGAATTCGGATTCTAGGGTTTGTTAGTGGAGAAGTGTGGGATATAGAGAAGTAGTGAGAGA