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Detailed information on CNT30610979


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9FMY1|C86B1_ARATH, E-value = 2e-57

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30372678Arabis alpinaArabidopsis thaliana20.2920.0994.71170forward
CNT3059547Arabis alpinaArabidopsis lyrata16.5954.388.49139forward

Expression of CNT30610979

Peptides detected in this lncRNA

>peptide 1 (32 aa)
HSVGPGFFVSFTRKQQKTNSPNTARKTSKKQR*

>peptide 2 (48 aa)
TALARASLLASHGSNRKQTVPTPQEKHRKNKDDHKLSLLKTWKKLQTL*

>peptide 3 (49 aa)
MMKTFLQSEIYQRSYLDTHTRALYSDLGVVVTLRPYFMYRFVVILGTTT*

Sequence

>CNT30610979
CCACAGCGTTGGCCCGGGCTTCTTTGTTAGCTTCACACGGAAGCAACAGAAAACAAACAGTCCCAACACCGCAAGAAAAACATCGAAAAAACAAAGATGA
TCATAAACTCTCTCTGTTAAAGACATGGAAGAAACTTCAGACATTATAGAGATGGTTTCTGAGGAATTGAATTGGTCTATTTGAAGAAGATGAAGTTTCT
TGTGTGATACGAAAGGAGTGTCTACAAATGCTAAGAGGGAAAGAGACATAAGTCCCTTGATGCCAACTGTTTAAGGTTGGGCACAAGAAGCCGATGTGAA
GCAATCTGTCATGCTGCTACATGGATGATGAAGACGTTTCTCCAGTCTGAAATATATCAAAGAAGTTATCTGGACACACACACACGCGCGCTCTACAGTG
ATCTTGGCGTGGTGGTCACCTTAAGACCGTACTTCATGTACAGGTTTGTCGTAATTCTTGGGACAACAACGTGATCTTGGACAACCTTGATGGAGTACCT
CAACAAGACTGAAGCAGCTATCATCTTCATCTGTAGGTAAGCAAATGTTTTCCCTAAACACAGCCTTGGCCCTGCATTGAACACAACATATTTGAACTGG
CCCTCACTAACAAACTGTCCTGCTTGGATCCATCTCTCTGGTCTGAACATTTCACAGTCTTTTCCCCAGATTGATTCCATCCTTCCCATGGCATAGATCG
AGAAGTAAACCCGTGAACCTTTTCTTATGAATGTCCCATCTGGAAACACATCATCTTCAATGGCTTGTTTCATTTCCATTGGAATTGGAGGGTAAAGTCT
GAGAGTTTCTGAAAGTGCTGCTTGCAGATATACCATCT