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Detailed information on CNT30610723


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONMEST001145, E-value = 1e-71

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677406Gossypium raimondiiSetaria viridis41.2837.580.75213forward
CNT30702712Gossypium raimondiiQuercus lobata56.0134.5388.24289forward
CNT30377016Gossypium raimondiiArabidopsis thaliana16.2823.0884.5284forward
CNT30727836Gossypium raimondiiCorchorus capsularis42.4458.8790.41219forward
CNT30381342Gossypium raimondiiManihot esculenta55.8135.6488.19288forward
CNT30526822Gossypium raimondiiPhaseolus vulgaris37.438.9181.35193forward
CNT30708916Gossypium raimondiiGlycine max36.4378.0188.3188forward
CNT30588905Gossypium raimondiiMusa acuminata13.3726.7489.8669forward
CNT30538767Gossypium raimondiiBrassica napus34.543.4183.15178forward
CNT30145300Gossypium raimondiiMedicago truncatula37.2188.0784.9192forward
CNT30462400Gossypium raimondiiSaccharum spontaneum44.3816.8380.35229forward
CNT30136123Gossypium raimondiiLolium perenne22.0921.0381.58114forward
CNT30207455Gossypium raimondiiHelianthus annuus55.2343.1281.05285forward
CNT30345066Gossypium raimondiiEragrostis tef43.2240.479.82223forward
CNT30479625Gossypium raimondiiArabidopsis halleri29.4645.9281.58152forward
CNT30365786Gossypium raimondiiSorghum bicolor23.0645.9583.19119forward
CNT30620107Gossypium raimondiiCajanus cajan5018.5686.82258forward
CNT30481517Gossypium raimondiiChara braunii18.0230.7984.9593forward
CNT30570222Gossypium raimondiiVitis vinifera56.5958.5286.3292forward
CNT30334895Gossypium raimondiiCynara cardunculus28.135.6384.14145forward

Expression of CNT30610723

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MSSSKCSGELWHTRTRRAMGLEIGSLRSS*

>peptide 2 (57 aa)
MKSPPSQLKLCLQQLSRRSPLRTFLSWPLLILPRRCISRAERVSWPWHGQGVHPEQP*

Sequence

>CNT30610723
TCGGTGGCTAAAATGCAGATTCAAGCTTGTTTTAGTATTTATGATGATGCATTTATAAGTAATCTCATCAGCAAGAAGTTTATTTAACAGTACATTGCAA
TCCAGAACAAAAAGTAGTCTCCAGAGCCTATAAAACATTCAACACAAAGAGAAAGAAACCATATCATGAAATCTCCACCATCTCAGCTAAAGCTTTGTTT
GCAGCAGCTTAGTAGACGTAGCCCTTTACGAACATTCCTTTCTTGGCCTCTTCTGATTCTCCCTCGCCGGTGTATTTCCCGAGCTGAGCGAGTGAGTTGG
CCTTGGCACGGACAAGGAGTGCATCCTGAGCAGCCTTAACGTTCTCAGGTCTGCCTCCCCATGTCTTCAAGCAAGTGTTCTGGAGAGCTCTGGCATACGA
GAACGAGACGTGCCATGGGTTTGGAGATTGGTTCATTGCGTTCAAGTTGAGGGTTGCTTCAACCTCGGACTGTCCGCCAGACAAGAACTGCACAACAGAA
ACGGTTTGTCCAATCC