« Back to Gossypium raimondii search


Detailed information on CNT30610552


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LXL5|SUS4_ARATH, E-value = 1e-129

BLAST vs NONCODE:
NONTCAT003036, E-value = 2e-71

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30377308Gossypium raimondiiArabidopsis thaliana23.6834.1685.53152forward
CNT30500405Gossypium raimondiiCoffea canephora37.0747.9881.93238forward
CNT30197818Gossypium raimondiiPisum sativum47.0462.0179.8302forward
CNT3061548Gossypium raimondiiArabidopsis lyrata44.735.0485.02287forward
CNT30713351Gossypium raimondiiMalus domestica golden61.9990.0579.65398forward
CNT30626879Gossypium raimondiiDaucus carota54.5262.8478.29350forward
CNT30478109Gossypium raimondiiArabidopsis halleri21.8156.2286.43140forward
CNT30621781Gossypium raimondiiCajanus cajan25.0854.9585.09161forward
CNT3023679Gossypium raimondiiPopulus trichocarpa32.2436.7782.61207forward

Expression of CNT30610552

Peptides detected in this lncRNA

>peptide 1 (78 aa)
MSSNIFFISAFSSKSLDSFLRSPPTTTRLTNSRNLAFFPYHSTSPLKFLTRSSLAIVNRIGLLRSFSTHQCSSFSTLL*

>peptide 2 (39 aa)
MSANHKSWPQRQSTQRLHIMRVVRRHPLCHKCNGKVHRS*

>peptide 3 (86 aa)
LTVLKSVKHLKVTTALEAVEVGHMLPEPVDTGQVDKDLSSLVAVVRINVEAGFTVNDNLGRSTIASCECRQTTSHGLNDSQPKGFI*

Sequence

>CNT30610552
GCTTACGGTACTTAAGAGCGTAAAACATCTCAAGGTAACGACGGCTCTCGAGGCGGTCGAGGTTGGACACATGCTTCCAGAACCCGTAGACACCGGTCAA
GTCGACAAGGATCTCAGCAGCTTGGTCGCCGTGGTAAGGATCAATGTTGAAGCCGGATTTACCGTGAACGATAATCTCGGCAGGTCCACCATTGCAAGTT
GCGAATGTCGGCAAACCACAAGTCATGGCCTCAACGACAGTCAACCCAAAGGCTTCATATAATGCGGGTTGTACGAAGGCACCCTTTGTGTCACAAATGT
AACGGTAAAGTTCACCGTTCCTAACTCTGTTCATTTGGGATGATATCCATCTGAACTGACCGTTCAGCTTGTACTTCTCAATGAGCTCGAACATCTTCTT
CATCTCAGCCTTCTCTTCCAAATCCTTGGACTCTTTTCTCCGATCTCCACCGACAACTACAAGGTTAACCAATTCACGCAACTTAGCATTCTTCCCGTAC
CATTCAACAAGTCCACTTAAATTCTTAACACGATCCAGCCTTGCCATTGTAAATAGAATTGGCTTGTTGCGGTCGTTTAGCACACACCAGTGCTCTTCAT
TTTCAACTTTGCTGTAAAGAAGTTGTTCGATCTCGGAATGGA