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Detailed information on CNT30610477


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690834Gossypium raimondiiOryza sativa44.9934.0489.18305reverse complement
CNT30677945Gossypium raimondiiSetaria viridis44.9920.1388.2305forward
CNT3021516Gossypium raimondiiCitrullus lanatus45.5816.893.53309forward
CNT30730658Gossypium raimondiiCorchorus capsularis45.5839.3697.09309forward
CNT30198947Gossypium raimondiiPisum sativum32.1526.1787.61218forward
CNT30502643Gossypium raimondiiNicotiana attenuata44.8423.4788.49304forward
CNT30163195Gossypium raimondiiPistacia vera11.533.4885.978reverse complement
CNT30191576Gossypium raimondiiSecale cereale44.9977.8188.85305reverse complement
CNT30297822Gossypium raimondiiTriticum aestivum44.9974.0388.85305reverse complement
CNT30543269Gossypium raimondiiBrassica napus39.829.1295.19270forward
CNT3082974Gossypium raimondiiBrassica juncea38.7930.9493.92263reverse complement
CNT3017923Gossypium raimondiiZea mays33.048085.71224forward
CNT30232463Gossypium raimondiiAnanas comosus17.1149.1593.97116reverse complement
CNT30684722Gossypium raimondiiTriticum urartu44.9928.5888.85305forward
CNT30356763Gossypium raimondiiLactuca sativa37.4646.8692.13254reverse complement
CNT3056176Gossypium raimondiiAmborella trichopoda38.55.6284.29261forward
CNT30319059Gossypium raimondiiAsparagus officinalis44.9937.5292.13305forward
CNT30150789Gossypium raimondiiBrachypodium distachyon34.8128.5788.56236forward
CNT30550344Gossypium raimondiiOryza brachyantha33.1995.7488225reverse complement

Expression of CNT30610477

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MHSLNRNPFAERSWLSCFGESPRSFRRPMLC*

>peptide 2 (29 aa)
IYIILELLHVKNFQTTSYSICVSIILSLS*

Sequence

>CNT30610477
ATTTACATCATTTTAGAATTGTTGCATGTTAAAAATTTTCAAACCACTTCCTATTCTATTTGTGTTAGTATAATTTTGAGTCTAAGCTAGTTCCAGACTT
GGATCCATTTGGATTTCAGAAAATTCGGGTTCAAGTTAGATGGGTTAAAATTTTTGAAATCTTTATGATCAATCAACAAGGTTGCTGCAAGATATGCCCA
TTACATAAAATATATAAACATATATAAACATTACATGGATAAGCTCAATAGAGAACCTTTTCCTCCTATATGAATCAATATTATTACATTCCAATTCCTT
ACTGATACCCCCCAAGGAAAATCCCGAATTGGATCCCAAATTGACGGGTTAGTGTGAGCTTATCCATGCGGTTATGCACTCTTTGAACAGGAATCCATTT
GCTGAAAGATCCTGGCTTTCGTGCTTTGGTGAGTCTCCGAGATCCTTTCGACGACCTATGTTGTGTTGAAGGGATATCTATATGATCCGATCGATTGCGT
AAAGCCCGCGGTAGCAACGGAACCGGGGAAAGTATACAGAAAAGACAGTTCTTTTCTTTCTATTATATTAGTATTTTCTATTCTATTTTTTCTATTCTAT
TAGTATTAGATTAGTATTCTATTCTATTAGTATTAGATTAGTATTAGTTAGATTAGATTAGTATTAGTTAGTGATCCC