Detailed information on CNT30610339


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673865Gossypium raimondiiSetaria viridis100.317.8386.83334reverse complement
CNT30708350Gossypium raimondiiGlycine max78.6832.7987.02262reverse complement
CNT30556102Gossypium raimondiiOryza glaberrima97.653.187.38325reverse complement
CNT30717508Gossypium raimondiiMalus domestica golden24.6210.1689.0282reverse complement
CNT30627901Gossypium raimondiiDaucus carota81.6823.2589.34272reverse complement
CNT30595932Gossypium raimondiiOryza meridionalis41.4410.3891.3138reverse complement
CNT30646246Gossypium raimondiiCannabis sativa62.7670.8589.47209forward
CNT30318962Gossypium raimondiiAsparagus officinalis99.415.8890.33331reverse complement
CNT30148621Gossypium raimondiiBrachypodium distachyon44.1437.8987.07147reverse complement
CNT30575379Gossypium raimondiiOryza barthii76.2858.9386.61254forward
CNT30116753Gossypium raimondiiOryza nivara82.8868.8386.59276reverse complement
CNT30726606Gossypium raimondiiLupinus angustifolius100.328.3389.52334reverse complement

Expression of CNT30610339

Peptides detected in this lncRNA

>peptide 1 (32 aa)
RSPLSFWGDEGIIPFKPFFSCFSRWFVESCNQ*

Sequence

>CNT30610339
AGATCGCCTCTTTCATTCTGGGGTGACGAAGGGATCATACCATTCAAGCCTTTTTTTTCATGCTTTTCCCGATGGTTTGTAGAAAGCTGCAATCAATAGG
ATTTTCCTAATCCTTCCTTCCCGAAAGGAAGAACGTGAAATTCTTTTCCTTTCTGCGGGGACTAGGAGATTAGATCTAGCCTTAAGAATAATGCTTGGCT
GATAAATAATTCACTTCTTGGTCTTCGACCTCCTTAGTCACTACAAACGCCCCCGATCAGTGCAATGGGATGTGTCTATTTATCTATCTCTTGACTTGAA
ATGGAAGCAGGTTTGAAAAAGGATCTTATTGTA