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Detailed information on CNT30610242


BLAST search results

BLAST vs Swiss-Prot:
sp|Q2L8Y7|RR16_GOSHI, E-value = 4e-43

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696488Gossypium raimondiiOryza sativa48.5418.0891200forward
CNT30277302Gossypium raimondiiChenopodium quinoa70.1550.783.74289forward
CNT30727992Gossypium raimondiiCorchorus capsularis71.3645.2394.9294forward
CNT30393155Gossypium raimondiiTriticum turgidum40.2925.6689.16166forward
CNT30435419Gossypium raimondiiAegilops tauschii53.1625.0689.5219forward
CNT30659176Gossypium raimondiiTriticum dicoccoides53.1666.5789.04219forward
CNT30655380Gossypium raimondiiRosa chinensis67.7233.9487.81279forward
CNT30127870Gossypium raimondiiCorymbia citriodora42.9631.7888.14177forward
CNT30685543Gossypium raimondiiTriticum urartu40.2960.5888.55166forward
CNT30151877Gossypium raimondiiPrunus persica26.4611.6182.57109reverse complement
CNT30424174Gossypium raimondiiPapaver somniferum74.2758.9687.91306forward
CNT3058916Gossypium raimondiiAmborella trichopoda54.8510.9988.94226forward
CNT30319235Gossypium raimondiiAsparagus officinalis27.6716.5787.72114forward
CNT30576782Gossypium raimondiiOryza barthii48.5419.4991200forward

Expression of CNT30610242

Peptides detected in this lncRNA

>peptide 1 (72 aa)
SLKYHEQLLWVELLFQGNREWREHLNRFDYLSDHKNPLFENLFPLFGIEHQLQLFDKRLVAFYHIVSNKVLP*

Sequence

>CNT30610242
TCTTTAAAATATCATGAACAATTGCTATGGGTTGAGCTCCTTTTTCAAGGAAATAGAGAATGGCGGGAACATTTAAATAGGTTTGATTATTTATCGGATC
ATAAAAACCCACTTTTCGAAAATCTCTTCCCTCTCTTCGGGATCGAACATCAATTGCAACTATTCGATAAACGGCTCGTTGCTTTCTACCACATCGTTTC
AAACAAAGTTTTACCATAACAATCCTCTAGTTTGAAGCATTGATTCAATTATGGAATCATGAATAGTCATTGGTTCAGTCGATACATAGTAATCTATCTA
TACTTTCTATATGAAATCAATTTCCTTCTATATGCTATATGAAATAAATAAATAATTTAGGAAGAAAAAGCCTCAATAAGAATTCAAACTATCCCATATT
GTATGATTGTCC