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Detailed information on CNT30610059


BLAST search results

BLAST vs Swiss-Prot:
sp|P48386|CHS1_CAMSI, E-value = 8e-145

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30281985Gossypium raimondiiChenopodium quinoa49.3414.1279.23337forward
CNT30628839Gossypium raimondiiVigna unguiculata68.3741.0781.16467forward
CNT30196027Gossypium raimondiiPisum sativum54.7641.0581.55374forward
CNT30507146Gossypium raimondiiNicotiana attenuata51.6833.1882.15353forward
CNT3045136Gossypium raimondiiPrunus dulcis76.4383.9285.25522forward
CNT3096581Gossypium raimondiiSolanum tuberosum69.5525.4380.63475forward
CNT3087878Gossypium raimondiiVigna radiata51.9822.7181.13355forward
CNT30171320Gossypium raimondiiTrifolium pratense55.4988.5580.21379forward
CNT30143557Gossypium raimondiiMedicago truncatula55.4936.281.27379forward
CNT3074040Gossypium raimondiiBrassica juncea30.1646.6182.52206forward
CNT30597791Gossypium raimondiiFraxinus excelsior11.2725.7585.7177forward
CNT30355776Gossypium raimondiiLactuca sativa42.0249.4881.18287forward
CNT30151821Gossypium raimondiiPrunus persica77.1691.4984.44527forward

Expression of CNT30610059

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MGFSISGMGSAPIITAAAPSPNNAWPTRLSR*

>peptide 2 (46 aa)
KCFYQALLYILRNKPRNILKKVKCKPNFTKVTINCTITIWQDRLGY*

>peptide 3 (76 aa)
MSTPLVVQKTRWVILDLGWPHSLMALVAASLPSFGTSTTTISCLASSEEAMYSHTLGFSFKISSVRYMYRFLIIDFS

Sequence

>CNT30610059
AAATGCTTCTACCAGGCTCTTCTCTATATTCTTCGAAATAAGCCCCGGAACATCCTTAAGAAGGTGAAATGTAAGCCCAACTTCACGAAGGTGACCATCA
ATTGCACCATCACTATCTGGCAAGATCGTTTGGGCTACTGAGACTAGTTCAAACATGGGCTTCTCGATTTCGGGCATGGGGTCTGCCCCGATTATAACAG
CTGCGGCACCATCACCAAACAATGCTTGGCCCACTAGACTGTCTAGGTGAGTGTCACTAGGTCCACGGAAGGTAACAGCAGTAATCTCCGAGCACACAAC
AAGTACACGAGCACCTTTGTTGTTCTCAGCTAAGTCCTTAGCCACTCGGAGCACCGTCCCCCCTGCGAAGCAACCTTGTTGGTACATCATGAGGCGCTTA
ACGGAGGGGCGGAGGCCCAAAAGCTTGGTGAGCTGGTAGTCAGCCCCAGGCATGTCCACACCACTAGTGGTGCAAAAGACAAGGTGGGTGATCTTGGACT
TGGGCTGGCCCCATTCCTTAATGGCCTTGGTGGCTGCTTCTTTGCCTAGCTTTGGCACCTCAACTACCACCATATCTTGCCTAGCATCCAGTGAAGAAGC
CATGTATTCACATACATTGGGATTCTCTTTCAAAATCTCTTCTGTAAGGTACATGTATCGCTTCTTGATCATCGATTTTTCAC