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Detailed information on CNT30610039


BLAST search results

BLAST vs Swiss-Prot:
sp|Q71T45|H32_EUPES, E-value = 9e-57

BLAST vs NONCODE:
NONBRAT001321, E-value = 2e-34

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30523795Gossypium raimondiiSetaria italica14.5520.6881.25128forward
CNT30698248Gossypium raimondiiQuercus lobata26.1431.5186.09230forward
CNT30709007Gossypium raimondiiGlycine max22.7384.0385200forward
CNT30178172Gossypium raimondiiSecale cereale17.3927.8779.74153forward
CNT30398097Gossypium raimondiiTriticum turgidum17.392079.74153forward
CNT30309861Gossypium raimondiiCamelina sativa20.6829.3585.16182forward
CNT30259840Gossypium raimondiiBrassica rapa23.5271.6383.09207forward
CNT30720909Gossypium raimondiiTriticum spelta17.3923.4379.74153forward
CNT30368649Gossypium raimondiiSorghum bicolor17.3936.4379.74153forward

Expression of CNT30610039

Peptides detected in this lncRNA

>peptide 1 (36 aa)
ILFDGSEDYLLCYRTANKRFMMVKHPLSFQRFTPNI*

>peptide 2 (96 aa)
MNSTQISILEQSDEISFGSLLKSGDGTALEPQIRLEILSNFSHKPLERKLSDQEFGALLVLPDFPKSYSSWPETVRLLHSSAATALLWNLKSVLKS*

Sequence

>CNT30610039
GAATTCTGTTTGATGGAAGCGAAGACTACTTGCTGTGCTATAGAACAGCGAACAAACGATTCATGATGGTAAAGCATCCATTAAGTTTTCAACGATTTAC
ACCAAACATTTGAAGAGACCGCAAAGACAATAAAATGAGCAAAAAGCTTAGATCTCAAATCCTAAGCATCAATCAACTAAAAACAAGCTGACCTAAGCTC
TCTCTCCTCTAATCCTCCTAGCAAGCTGGATATCTTTAGGCATGATTGTAACCCTCTTAGCATGAATAGCACACAGATTAGTATCCTCGAACAGTCCGAC
GAGATAAGCTTCGGCAGCCTCTTGAAGAGCGGCGACGGCACTGCTTTGGAACCTCAAATCCGTCTTGAAATCTTGAGCAATTTCTCTCACAAGCCTCTGG
AACGGAAGCTTTCGGATCAAGAGTTCGGTGCTCTTCTGGTACTTCCTGATTTCCCTAAGAGCTACAGTTCCTGGCCTGAAACGGTGAGGCTTCTTCACTC
CTCCGCGGCAACGGCACTGCTTTGGAATCTCAAATCAGTCTTAAAATCTTGAGCGATTTCTCTCACAAGCCTCTGGAATGGAAGCTTTCGGATCAAGAGC
TCGGTGCTCTTCTGGTACTTCCTGATTTCCCTAAGAGCCACAGTTCCTGGTCTGAAACGGTGAGGCTTCTTCACTCCTCCGGTCGCCGGTGCTGACTTCC
GAGCAGCTTTAGTGGCCAGCTGCTTACGTGGAGCCTTCCCACCGGTTGATTTTCTAGCAGTTTGCTTGGTACGAGCCATATGTCAAAGCGATTTGATGAG
AAAATAAGTGTTTAGATTGCTTGAAAGCAAGAGTGTTTTGAAGGAAAAGGTTTTCGATGTAACGATTGGGTGAATCTGGG