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Detailed information on CNT3061002


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30516813Arabidopsis lyrataJuglans regia28.9310.4481.25160forward
CNT30372926Arabidopsis lyrataArabidopsis thaliana15.3722.1490.5985reverse complement
CNT30729814Arabidopsis lyrataCorchorus capsularis20.4313.8384.07113forward
CNT3069543Arabidopsis lyrataQuercus suber23.6916.8480.92131forward
CNT3043425Arabidopsis lyrataPrunus dulcis23.1520.8181.25128forward
CNT30540682Arabidopsis lyrataBrassica napus20.4316.9290.27113forward
CNT3078507Arabidopsis lyrataBrassica juncea20.4312.6391.15113forward
CNT30264014Arabidopsis lyrataBrassica rapa20.4315.3590.27113forward
CNT30601253Arabidopsis lyrataFraxinus excelsior15.7337.8385.0687forward
CNT30112641Arabidopsis lyrataFicus carica23.8711.3583.33132forward

Expression of CNT3061002

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MPTNSFVLLCTSFFGIISDHVTVHISFIPMYFLE*

>peptide 2 (44 aa)
RDYKCSEASTPITKHLSSRRSSASRTFESSNLSISYDLQLILTG*

>peptide 3 (54 aa)
MNWVQRKTYLYNVTFGLYMLDWWERYLFNSLVIILMWFILYNGSRYFSELCKRS*

>peptide 4 (39 aa)
GIISVLKLLHQSPNTSPHEDLQLQGLLNRRISLLVTISN*

Sequence

>CNT3061002
CGGGATTATAAGTGTTCTGAAGCTTCTACACCAATCACCAAACACCTCTCCTCACGAAGATCTTCAGCTTCAAGGACTTTTGAATCGTCGAATCTCTCTA
TTAGTTACGATCTCCAACTGATTCTTACTGGGTAATTTTCAAAAACTTGAAAATTGAGTGTTTCCGACCGTCGAATCGGATTCGATGAACTGGGTTCAAC
GAAAAACCTATCTTTACAACGTCACCTTCGGGCTTTACATGCTTGATTGGTGGGAACGATACCTATTCAATTCTTTGGTGATAATCTTGATGTGGTTTAT
TCTGTACAATGGATCTCGCTATTTTTCAGAGCTCTGCAAGAGGTCATAGTCATCACGCCATGGAAGCTTGAAACCGACATGGTTATCTGAGACGTATGCC
AACAAACTCCTTTGTGCTGCTTTGCACCTCCTTCTTTGGCATAATTTCTGATCATGTAACTGTTCATATATCATTTATTCCCATGTATTTTTTGGAATGA
ACTTCATTTGTTCGATTCTACTTGCTTCTACTTCAAATTTTGAGACAGGGCCA